JAK2 V617F mutation detection

Transport arrangements

Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post.

Sample storage arrangements

Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight.

How to request

Request form/ TRAK request.

Availability

Test not available during restricted service.

Anticipated turnaround

21 days

What happens if the result is positive or abnormal

Genetic results will not be telephoned. They can be emailed if secure addresses are verified.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

The presence of the JAK2 V617F mutation is associated with myeloproliferative neoplasms, including polycythaemia vera, essential thrombocythaemia and myelofibrosis. This variant should not be present in normal individuals. See the relevant BCSH guidelines for further information.

https://b-s-h.org.uk/guidelines/guidelines/gpp-use-of-genetic-tests-to-diagnose-and-manage-patients-with-myeloproliferative-and-myeloproliferativemyelodysplastic-neoplasms-and-related-disorders/

Citrated anticoagulated venous blood or 150µl DNA may be sent instead of an EDTA specimen

Container_Adult1
Volume - Adult 1

​2.7ml

Additive - Adult 1

​EDTA

Viral Haemorrhagic Fever testing

Transport arrangements
Arranged by SNVTS –
The local hospital team/ laboratory should provide SNVTS by telephone with details of the sample shipment (driver identity, vehicle registration, courier organisation, tracking number, contact telephone number and estimated time of arrival at the Royal Infirmary of Edinburgh). If SNVTS instructs collection directly (see above), the test service will gather such data from the courier.
 

​Please refer to the Scottish Viral Haemorrhagic Test Service Brief User Guide

Sample storage arrangements

​​Special precautions: If processing is delayed, storage at ambient temperature is preferred. Delays of over 24 hrs are undesirable.

Special instructions for collection
Samples required
2 x EDTA blood (minimum 2ml ) e.g in 2.7ml tube
and 1 x Clotted blood (minimum 2ml) e.g in 4.9 ml tube
and if possible 1 x urine ( minimum 1ml)
 

Please refer to the Scottish Viral Haemorrhagic Test Service Brief User Guide

How to request

​Use appropriate request form: SNVHF Test Form



Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of birth, Gender and location of patient.

Availability

​7 days a week, 24 hours a day.

Anticipated turnaround

​1 day

What happens if the result is positive or abnormal

​All results conveyed to the Duty Virologist or On-Call Virologist.

General additional information
Specific information: Please note that samples to be sent to SNVTS for testing should NOT be processed in any manner by the local hospitalteam/ laboratory. Instead, the samples above should be sent intact and unprocessed. There is no cost incurred to Scottish Health Boards for VHF testing at SNVTS.
 
Factors known to significantly affect the results: Haemolysis
 
Clinical information: This test is only performed on patients where there is prior agreement from IFS that testing is appropriate.

Levetiracetam

Anticipated turnaround

​28 days

General additional information

​For gel tubes, separate serum/plasma ASAP.

Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

​1mL

Additive - Child 1

​Lithium-heparin

Volume - Adult 1

​1mL

Volume - Adult 2

​1mL

Volume - Adult 3

​1mL

Additive - Adult 1

​Lithium-heparin

Additive - Adult 2

​None

Additive - Adult 3

​K-EDTA

Hyaluronic acid

Availability

​Test only available to the following specialties: GI, dermatology and rheumatology

Anticipated turnaround

​7 days

General additional information

Background

Hyaluronic acid (HA) is an unbranched glycosaminoglycan, produced mainly in mesenchymal cells and is widely distributed in connective tissue throughout the body.1,2 Liver is an significant source of HA.  It has several physiological functions, e.g. lubrication in joints, prevention from bacterial invasion and internal body hydration.  In patients with developing fibrotic liver disease, serum levels of HA increase.  Serum concentration of HA is consistent with stage of fibrosis, and also decreases with a response to interferon therapy in patients with HCV chronic infection.3‑9  It therefore has very useful clinical utility as a non-invasive marker to exclude cirrhosis. 10  HA has been available in Lothian for many years. Testing was originally carried out by the Hepatology laboratory at the University of Edinburgh, before the service transferred in 2019 to NHS Lothian Department of Clinical Biochemistry.  The service is available to gastroenterology, dermatology and rheumatology with cross charging arrangements in place.

 

Laboratory Clinical Interpretation

In NHS Lothian a reference range of <60 ng/mL is used.  At this cut-off concentration of 60 ng/mL, HA typically shows a negative predictive value of up to 100% and a positive predictive value of 61% for cirrhosis.11, 12  In practice, values over 100 ng/mL are suggestive of cirrhosis however values normally exceed this.  In contrast, values less than 60 ng/mL are very reassuring, especially if combined with a normal Fibroscan and FIB4 score.  The lower analytical limit of the assay has been revised to 50 ng/mL from August 2021 due to inadequate performance below this level. This means a result of less than 50 will now appear on reports as “<50 ng/mL” and is unlikely to be clinical significant.

 

Serum HA concentrations in patients with conditions such as rheumatoid arthritis, osteoarthritis and systemic lupus erythematosis need to be interpreted with the knowledge that these conditions may also cause elevated results.11 Values of 50-100 ng/mL are common in the elderly and most likely reflect joint damage.

 

How often is monitoring hyaluronic acid required?

Colleagues in Hepatology (NHS Lothian) suggest monitoring more frequently than once every 2 years is unlikely to be helpful in most cases.  Repeat requests within 18 months will no longer be processed (unless it is to confirm a new result >60 ng/mL).

 

Indications for Fibroscan and hepatology referral

For individuals with a newly elevated hyaluronic acid (i.e. >60 ng/mL), suggest repeat and if >60ng/mL on repeat specimen, refer for Fibroscan.

 

For individuals with a new finding of hyaluronic acid >100 ng/mL, suggest repeat and if >100ng/mL on repeat specimen, refer for Fibroscan and a hepatology referral.

 

References

1. Stryer T., et al.: Biochemistry (Third Edition). 1988; 275-277.

2. Laurent T.C., et al.: Ciba foundation Symposium. 1986; 124: 9–29.

3. Oberti F., et al.: Gastroenterology. 1997; 113(5): 1609-1616.

4. Plevris J.N., et al.: Eur J Gastroenterol Hepatol. 2000; 12(10): 1121-1127.

5. Guéchot J., et al.: J Hepatol. 1995; 22 (2 Suppl): 103-106.

6. Pares A., et al.: Hepatology. 1996; 24 (6): 1399-1403.

7. Yamada M., et al.: J Gastroenterol Hepatol. 1996; 11(7): 646-651.

8. Sandra J., et al.: Hepatology. 2004; 40 (4): 1200, 687A.

9. Suzuki A., et al.: Liver Int. 2005; 25 (4): 779-786.

10. Gudowska M., et al.: Acta Biochim Pol. 2017; 64(3): 451-457.

11. Frébourg T. et al.: Hepatology. 1986; 6(3):392-395.

12. Majid M. et al.: Ann Rheum Dis. 2004; 63: 1166-1168.

Container_Adult1
Volume - Child 1

​1 mL

Additive - Child 1

​None

Volume - Adult 1

​1 mL

Additive - Adult 1

​None

Myositis Screen

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

Specialist test must be cleared by Consultant Immunologist.

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Dundee Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Anti-Ganglioside

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

21 Days

General additional information

​Please refer to Glasgow Neuroimmunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Pemphigoid/Pemphigus

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Insulin Antibody

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Histone Antibodies

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Adrenal, Ovary & Testes Antibodies

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

C1Q Antibody

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

Specialist test must be cleared by Consultant Immunologist.

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

C1Q Level

Transport arrangements

Special instructions for collection

Serum samples only please.

​Sample must be received in the laboratory within 2 hours of venesection, and by prior arrangement.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

Specialist test must be cleared by Consultant Immunologist.

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

AP50/AP100 (Alternative Complement Pathway)

Transport arrangements

​ 

Special instructions for collection

​Sample must be received in the laboratory within 2 hours of venesection, and by prior arrangement.

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology and on a Clinical Immunology request form.

Specialist test must be cleared by Consultant Immunologist.

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

CH50 (Classic Complement Pathway)

Special instructions for collection

​Sample must be received in the laboratory within 2 hours of venesection, and by prior arrangement.

Serum samples only please.

How to request

​All requests for this test must be made through Clinical immunology and on a Clinical Immunology request form.

Specialist test must be cleared by Consultant Immunologist.

Availability

​Normal Working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

C1 Esterase Inhibitor Function & Level

Transport arrangements

.

Special instructions for collection

​Sample must be received in the laboratory within 4 hours of venesection, and by prior arrangement.

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology email at ImmunologyLabs@nhslothian.scot.nhs.uk

Availability

​Normal working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Sheffield Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

LGI1/CASPR2 Antibodies

Special instructions for collection

Can be performed on both serum and CSF.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Voltage Gated K+ Channel (VGKC)

Special instructions for collection

Can be performed on both serum and CSF.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

 

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Voltage Gated Ca+ Channel (VGCC)

Special instructions for collection

Can be performed on both serum and plasma samples.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Fixed and Live NMDA Receptor Antibodies

Special instructions for collection

​Can be performed on both serum and CSF

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Anti-MUSK Antibodies

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Myelin Oligodendrocyte Glycoprotein Antibodies (MOG)

Special instructions for collection

Can be performed on both serum and CSF.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Myelin Associated Glycoprotein (MAG)

Special instructions for collection

Serum samples only please.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Glycine Receptor Antibodies

Special instructions for collection

Can be performed on both serum and CSF.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

GABA/AMP1/AMP2

Special instructions for collection

Can be performed on both serum and CSF.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Aquaporin 4 Antibody

Special instructions for collection

Serum or CSF can be used.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Anti-Yo, Hu and Ri (Paraneoplastic/Neuronal Antibodies)

Special instructions for collection

Serum or CSF samples can be used.

How to request

​All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal working hours Mon to Fri 9am to 5pm

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Acetyl Choline Receptor Antibodies (ACH)

Special instructions for collection

Serum samples only please.

How to request

​All Requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

 

Availability

​Normal Working hours Mon to Fri 9am to 5pm.

Anticipated turnaround

​21 Days

General additional information

​Please refer to Oxford Immunology Laboratory for current accreditation information and reference ranges.

 

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

HIT Assay (HIT IgG)

Transport arrangements

​This is an URGENT test - samples must be transported to the laboratoy as soon as possible (by taxi or courier, where appropriate).

Sample storage arrangements

​None required.

Special instructions for collection

​None required.

Please note: BOTH plasma and serum samples are required for HIT testing.

How to request

​This test MUST be arranged via the Haematology medical staff.

Availability

​24/7

Anticipated turnaround

​24 hours

What happens if the result is positive or abnormal

​All results are telephoned to the haematology Registrar and referred to the consultant Haematologist for comments.

Volume - Child 1

1mL

Volume - Child 2

1.4ml

Additive - Child 2

​Sodium Citrate

Volume - Adult 1

1mL

Volume - Adult 2

​3ml

Additive - Adult 2

​Sodium Citrate

Urea (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO15189 for peritoneal and drain fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Osmolality (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Urate (fluid)

Transport arrangements

If patient is on rasburicase transport to the laboratory on ice immediately.

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Triglycerides (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for pleural and peritoneal fluid.

General additional information

Main indication: query chylothorax.

If cloudy after centrifugation, inspection for chylomicrons may be required.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Protein, total (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO15189 for pleural and peritoneal fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Sodium (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Potassium (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

pH (fluid)

Special instructions for collection

Should be collected anaerobically - expel air bubbles from the syringe.

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be free from particles. Measured on a blood gas analyser using a clot filter.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​Heparin

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​Heparin

Magnesium (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Lactate dehydrogenase (LDH, fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for pleural and peritoneal fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Glucose (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for pleural, peritoneal and drain fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

Container_Adult1
Container_Child1
Volume - Child 1

​0.2 mL

Additive - Child 1

​F-EDTA

Volume - Adult 1

​0.2 mL

Additive - Adult 1

​F-EDTA

Creatinine (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for peritoneal and drain fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

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Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Cholesterol (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for pleural fluid.

General additional information

Main indication: query chylothorax.

If cloudy after centrifugation, inspection for chylomicrons may be required.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

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Volume - Child 1

​0.2 mL

Additive - Child 1

​None

Volume - Adult 1

​0.2 mL

Additive - Adult 1

​None

Chloride (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

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Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Calcium (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

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Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Amylase (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for peritoneal and drain fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.
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Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

Albumin (fluid)

Anticipated turnaround

1 day

Static information/disclaimer

This test is accredited to ISO 15189 for pleural and peritoneal fluid.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines for interpretation of fluid biochemistry and indication for testing.

 

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Container_Child1
Volume - Child 1

​0.1 mL

Additive - Child 1

​None

Volume - Adult 1

​0.1 mL

Additive - Adult 1

​None

α-Fetoprotein (AFP, fluid)

Anticipated turnaround

4 days

Static information/disclaimer

This test is currently unaccredited to ISO 15189 for fluid analysis.

General additional information

All fluids must be centrifuged and then analysed only if free from particles.

Please see the ACBI guidelines ‘The biochemistry of body fluids’ for interpretation of fluid biochemistry and indication for testing.

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Volume - Child 1

​0.4 mL

Additive - Child 1

​None

Volume - Adult 1

0.4 mL

Additive - Adult 1

​None

Throat swab for culture for pharyngitis

Transport arrangements

​Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store in fridge (4-6°C).

Special instructions for collection

Useful if:

  • Patient is part of an outbreak as notified by Health Protection Team
  • Patient is a healthcare worker or in regular contact with vulnerable individuals such as the immunocompromised, the comorbid, or those with compromised skin integrity
  • Patient is treated with an antibiotic other than a penicillin or cephalosporin. (Locally in children approximately 90% and in adults 80% of Strep pyogenes are sensitive to clarithromycin/ azithromycin. )
  • Treatment failure and recurrent/persistent tonsillitis
  • Quinsy
  • Penicillin allergy
  • Tonsillitis with rash
  • Clinical suspicion of Diphtheria


Please let us know about the following information as it may alter specimen processing:
• Treatment failure and recurrent tonsillitis, or tonsillitis with rash – we will look for Arcanobacterium haemolyticum.
• Persistent sore throat or Quinsy – we will look for Fusobacterium necrophorum.

If your patient has any of the following clinical details, please contact the Duty Microbiologist as it influences sampling, and which tests will be carried out on samples.

Testing for Corynebacterium species (C. diphtheriae and C. ulcerans, the causative agents of diphtheria) will be carried out on samples from patients where any of the following clinical details are provided.  

• Membranous or pseudomembranous pharyngitis/tonsillitis 
• Contact with a confirmed case of diphtheria within the last 10 days 
• Travel abroad (or contact with anyone who has travelled) to a high risk area for diphtheria within the last 10 days 
• Contact with any animals (including household pets, visiting a farm or petting zoo) within the last 10 days 
• Recent consumption of any type of unpasteurised milk or dairy products 
• Patient works in a clinical microbiology laboratory, or similar occupation, where Corynebacterium species may be handled.

How to request

GP order comms, or via Trak ("C&S - Swabs" and change site to "Swab, throat"), or request form.

Availability

Samples are processed between 0900-2000 (RIE) and 0900-1700 (SJH). Samples taken outwith these hours will be processed the following morning.

Anticipated turnaround

​Up to 5 days.

What happens if the result is positive or abnormal

Result will automatically appear on TRAK and may be telephoned to originating location if required.

General additional information

Please let us know about the following information as it may alter specimen processing:

  • Treatment failure and recurrent tonsillitis, or tonsillitis with rash – we will look for Arcanobacterium haemolyticum
  • Persistent sore throat or Quinsy – we will look for Fusobacterium necrophorum.
  • Please indicate in the clinical details if Diphtheria testing is required.

Diphtheria

Classic respiratory Diphtheria is now rare in the UK and no longer easily recognised. Mild respiratory cases resemble Streptococcal pharyngitis and classical pseudomembrane may not develop, particularly in vaccinated individuals.

Diphtheria is a clinical and public health emergency. A strong clinical suspicion of infection needs urgent secondary care referral. Please indicate in the clinical details if Diphtheria testing is required.

Indications for testing a throat swab for Diphtheria

  • Membranous or pseudomembranous pharyngitis/tonsillitis
  • Contact with a confirmed case of diphtheria within the last 10 days
  • Travel abroad (or contact with anyone who has travelled) to a high-risk area for diphtheria within the last 10 days
  • Recent consumption of any type of unpasteurised milk or dairy products
  • Occupational exposure through working in a laboratory where Corynebacterium species may be handled
  • Exposure to unwell animals with ulcers that might be cutaneous diphtheria
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Neonatal Rapid QF-PCR (Blood)

Transport arrangements

​Courier. Taxi

Sample storage arrangements

​Fridge.

How to request

​Referral form available from Laboratory main website

Anticipated turnaround

​3d

What happens if the result is positive or abnormal

​Result reported to referring clinician

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Volume - Child 1

​1-2ml

Platelet Nucleotides

Special instructions for collection
Sample tubes are provided directly from the Specialist Haemostasis Laboratory. Contact the Laboratory on 0131 242 6837

 

How to request

​Must be discussed and arranged with Haematology medical staff.

Availability

​Wednesday 09:00 - 13:00

For alternative times, contact the laboratory for special arrangement.
Anticipated turnaround

21 days

What happens if the result is positive or abnormal

​Results are not phoned. This test is only available by direct requesting from Haematology medical staff.

Static information/disclaimer

​​This test is not accredited to ISO15189 at the Royal Infirmary of Edinburgh.

Volume - Adult 1

​Tubes are provided within the Haemophilia centre.

Beta 2- Glycoprotein IgM

Transport arrangements

​Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

​The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

​This tests is only availble by special arrangement with the Haeamatology medical staff.

Availability

​Monday - Friday: routine service 9:00 - 17:00. Test not available during restricted service.

Anticipated turnaround

​10 days

Volume - Adult 1

​3ml - fill to line

Additive - Adult 1

​Sodium Citrate

Beta 2- Glycoprotein IgG

Transport arrangements

​Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Sample storage arrangements

​​

Special instructions for collection

​The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

​This tests is only availble by special arrangement with the Haeamatology medical staff.

Availability

​Monday - Friday: routine service 9:00 - 17:00. Test not available during restricted service.

Anticipated turnaround

​10 days

Volume - Adult 1

​3ml - fill to line.

Additive - Adult 1

​Citrate

Hepatitis Delta Serology

Transport arrangements

​Ambient temperature via porter, courier, Royal Mail or DX. Compliant with IATA packing instruction 650

Sample storage arrangements

​If processing is delayed, refrigeration is preferable to storage at ambient temperature. Delays of over 48 h are undesirable

Special instructions for collection

Minimum volume of sample: 1 mL

Specimen type: Venous blood or serum​​

4.7 mL clotted blood tube or 1 mL serum

Availability

​Monday - Friday

Anticipated turnaround

10 days

General additional information

​Specific information: HBsAg status

Factors known to significantly affect the results: Haemolysis

Clinical information: This test is only performed on patients who are HBsAg positive and if a patient is found to be delta antibody positive the sample is referred for Hepatitis Delta virus PCR to determine viraemia status.

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Volume - Adult 1

​4.7 ml

Volume - Adult 2

1.0 ml

HCV Resistance

Sample storage arrangements

​Plasma should be stored at 4°C and dispatched as soon as possible

Special instructions for collection

Minimum volume: 1ml

​Stored frozen plasma (1ml) at -20oC or lower

How to request

​All requests must be emailed to loth.bbvsequencing@nhslothian.scot.nhs.uk to discuss prior to sending of samples.

Availability

​Monday - Friday

Anticipated turnaround

10 days

General additional information

Special precautions: Haemolysed specimens can be inhibitory

Clinical information
Testing may be indicated at baseline and treatment failure depending on the DAA regimen

HCV resistance testing is only performed when there is evidence of treatment failure on direct acting agents and where it is helpful to select future HCV treatment options

All samples tested should be genotype 1a HCV with viral load >100,000 IU/ml

For tests requested on samples already held in the NHS Lothian laboratory email loth.bbvsequencing@nhslothian.scot.nhs.uk

 

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Volume - Adult 1

​Clean molecular grade 2 ml vial

HCV Genotyping

Special instructions for collection

Minimum volume: 1ml​

Stored frozen plasma (1ml) at -20oC or lower

How to request

​​HCV genotyping is only carried out if there is evidence of ongoing HCV viraemia

Availability

​Monday - Friday

Anticipated turnaround

10 days

General additional information

​Clinical information: HCV viral load of sample being sent and current HCV risk status

Special precautions: Haemolysed specimens can be inhibitory

For tests requested on samples already held in the NHS Lothian Laboratory email loth.bbvsequencing@nhslothian.scot.nhs.uk

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Volume - Adult 1

​Clean molecular grade 2 ml vial

HIV Tropism

Transport arrangements

​Blood to arrive at the laboratory within 4 hours of being drawn and not later than 4 pm to allow time for processing.

Special instructions for collection
Minimum volume: 6ml
 
Freshly drawn whole blood in EDTA
 
Collection container (including preservatives): CE marked leak proof container
How to request

Prior to sending, contact lab to discuss.

Availability

​Monday - Friday

Anticipated turnaround

​14 days

General additional information

​​​Clinical information: Ensure request form is completed in full as genotypic tropism determination is based on a bioinformatic tool that requires the data requested to produce a satisfactory result

Special precautions: Transport should not be delayed, samples will not be accepted

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Volume - Adult 1

​6 ml

HIV Resistance

Transport arrangements

​Ambient temperature via courier or DX. Compliant with IATA packing instruction 650

Special instructions for collection

Minimum volume: 1ml​

Stored frozen plasma (1ml) at -20oC or lower

Availability

​Monday - Friday

Anticipated turnaround

10 days

General additional information

Clinical information: Complete treatment history of the patient, results of previous tests if carried out elsewhere, viral load if carried out elsewhere.

If tests are requested on stored samples already held in the NHS Lothian Laboratory requests should be emailed to loth.bbvsequencing@nhslothian.scot.nhs.uk
 
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Volume - Adult 1

Clean molecular grade 2 ml vial

HIV Avidity

Transport arrangements

​Ambient temperature via porter, courier, Royal Mail or DX. Compliant with IATA packing instruction 650

Sample storage arrangements

​If processing is delayed, refrigeration is preferable to storage at ambient temperature. Delays of over 48 h are undesirable.

Special instructions for collection

Minimum volume of sample: 0.5 mL

Specimen type: Venous blood or serum​

4.7 mL clotted blood tube or 0.5 mL serum from clotted blood

How to request

This test is only performed on new HIV diagnoses and not on transfers of care. Note this test will be carried out automatically on samples from new diagnoses confirmed in Lothian

Availability

​Monday - Friday

Anticipated turnaround

30 days

Static information/disclaimer

​This test is not currently accredited to ISO15189.

General additional information

Clinical Information: Baseline HIV viral load should be provided.

Factors known to significantly affect the results: Haemolysis

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Volume - Adult 1

​4.7 mL

HIV Confirmation

Transport arrangements

​Ambient temperature via porter, courier, Royal Mail or DX. Compliant with IATA packing instruction 650

Sample storage arrangements

​If processing is delayed, refrigeration is preferable to storage at ambient temperature. Delays of over 48 h are undesirable

Special instructions for collection

​4.7 mL clotted blood tube or 1ml serum (small sterile container)

Availability

​Monday-Friday.

Anticipated turnaround

​2 days

General additional information

Specific information: Initial screening results with index and type of assay used including manufacturer

Factors known to significantly affect the results: Haemolysis
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Volume - Adult 1

​4.7 ml

Vitamin B6

Sample storage arrangements

Protect sample from light.

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

Anticipated turnaround

​28 days

General additional information
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Volume - Child 1

​2.0 mL

Additive - Child 1

​Lithium heparin

Volume - Adult 1

​2.0 mL

Volume - Adult 2

​2.0 mL

Additive - Adult 1

​Lithium heparin (non gel)

Additive - Adult 2

​Potassium EDTA

Vitamin B2

Sample storage arrangements

Protect sample from light.

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

Anticipated turnaround

​28 days

General additional information
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Container_Adult2
Container_Child1
Volume - Child 1

​2 mL

Volume - Adult 1

​2 mL

Volume - Adult 2

​2 mL

Additive - Adult 1

​Lithium heparin (non gel)

Additive - Adult 2

​Potassium EDTA

IDH1 and IDH2 mutation analysis

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.

 
 
Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

The pyrosequencing test is accredited to ISO 15189.  This NGS test is also accredited to ISO 15189:2012.

Please note: alternative methodologies may be used. Full details will be included in all reports.

 
General additional information
​The 2016 World Health Organisation Classification of Tumours of the Central Nervous System (CNS) requires the classification of CNS tumours using a broad range of molecular tests; accurate classification is essential for selection of appropriate treatment modalities. Detection of mutations in IDH1 and IDH2 assists the differential diagnosis of gliomas and provides key diagnostic and prognostic information: IDH mutation status is a definitive marker of secondary glioblastoma; astrocytomas and oligodendrogliomas can contain mutations in IDH1 or IDH2, whereas other CNS tumours usually do not contain these mutations.
 

IDH1 and IDH2 mutation analysis is carried out by NGSand pyrosequencing. The pyrosequencing assay detects and differentiates 5 different “hot spot” mutations within IDH1 and 6 different mutations within the IDH2 gene.  These regions account for 99.7% of reported mutations in the IDH1 and IDH2 genes.  For further details of the NGS assay, including regions assessed, click here.  

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

 

ROS1 gene rearrangement

Transport arrangements

Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

ROS1 gene rearrangement analysis can be requested individually or as part of the lung cancer panel.

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.
 
 
 
Please also refer to our detailed requesting instructions.
Availability

Monday - Friday. 09:00 – 17:00

Anticipated turnaround

An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

ROS1 FISH is accredited to ISO15189.

ROS1 Immunohistochemistry is not currently accredited to ISO15189.

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information
​The ROS proto-oncogene 1, receptor tyrosine kinase, encoded by the ROS1 gene, is structurally similar to the anaplastic lymphoma kinase (ALK) protein. ROS1 gene rearrangements involving a range of fusion partners have been described in 1-2% of non-small cell lung cancers, resulting in abnormal expression of the ROS1 protein. The presence of ROS1 gene rearrangement predicts response to the same classes of tyrosine kinase inhibitors used to treat ALK-positive lung cancers.

Immunohistochemistry is carried out to detect aberrant ROS1 protein expression using the D4D6 clone (Cell Signaling). ROS1 gene rearrangement analysis is carried out by fluorescence in-situ hybridization (FISH).

Analysis of the ROS1 gene is carried out as part of the lung cancer testing panel, which also includes EGFR and KRAS mutation analysis, PD-L1 expression and detection of ALK gene rearrangments.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

β-d-glucan

Transport arrangements

​​As soon as practicable

Sample storage arrangements

​Refrigerate at 4 to 6 degrees

How to request

By request form.

Availability

​This is a referred test so should be sent Monday-Friday 9am-5pm.

Anticipated turnaround

​14 days

General additional information

This test is sent to the Mycology Reference Laboratory in Manchester. EDTA bloods are NOT suitable

Guidance on use of fungal antigen tests is available from IDSA

https://academic.oup.com/cid/article/63/4/e1/2595039

For chronic pulmonary forms of aspergillosis, Aspergillus antibodies are used instead of galactomannan and β-D-glucan tests. These tests are available from the Immunology laboratory.

For chronic cavitary pulmonary aspergillosis and aspergilloma, request Aspergillus IgG antibody test:

https://www.edinburghlabmed.co.uk/TestDirectory/Pages/Display.aspx?tID=4590

For allergic bronchopulmonary aspergillosis (ABPA), request Aspergillus IgE antibody and total IgE tests:

https://www.edinburghlabmed.co.uk/TestDirectory/Pages/Display.aspx?tID=4589

Serum and BAL galactomannan is recommended as an accurate marker for the diagnosis of Invasive Aspergillosis  (IA)  in adult and paediatric patients when used in certain patient subpopulations (haematologic malignancy, HSCT) (strong recommendation; high-quality evidence).

Galactomannan is not recommended for routine blood screening in patients receiving mould-active antifungal therapy or prophylaxis, but can be applied to bronchoscopy specimens from those patients (strong recommendation; high-quality evidence).

Where patients not on mould – active therapy are being screened, samples should be tested twice a week. Galactomannan is not recommended for screening in SOT recipients or patients with CGD (strong recommendation; high-quality evidence).

Serial monitoring of serum galactomannan can be used in the appropriate patient subpopulations (haematologic malignancy, HSCT) who have an elevated galactomannan at baseline, to monitor disease progression and therapeutic response, and predict outcome (strong recommendation; moderate-quality evidence).

Serum assays for β-D-glucan are recommended for diagnosing IA in high-risk patients (haematologic malignancy, allogeneic HSCT), but are not specific for Aspergillus (strong recommendation; moderate-quality evidence)

β-D-glucan has not been extensively studied in IA to predict outcome (weak recommendation; low-quality evidence

Endocarditis   Galactomannan and β-D-glucan tests may be used for diagnosis of invasive fungal infections such as endocarditis. Please discuss such cases with a Medical Microbiologist before ordering the test.

Pneumocystis pneumonia   β-D-glucan may be used for confirming the diagnosis of Pneumocystis pneumonia when pulmonary samples are not available. Please discuss such cases with a Medical Microbiologist before ordering the test.

Severe influenza infection   Patients with severe influenza are at increased risk for IA. Consider galactomannan testing of BAL in patients with influenza admitted to critical care. Serum galactomannan testing is also indicated but is less sensitive. A negative galactomannan result does not exclude IA. β-D-glucan testing of serum is a sensitive but non-specific test for invasive fungal infection, positive β-D-glucan tests unrelated to fungal infection are more likely during the first few days on the ICU and in patients with sepsis or receiving blood products or immunoglobulin therapy.

Please see current PHE guidance at:  https://www.gov.uk/government/publications/seasonal-influenza-managing-cases-in-critical-care-units

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Volume - Child 1

5ml

Volume - Child 2

5ml 

Volume - Child 3

Bronchoalveolar lavage fluid

Volume - Adult 1

​5ml

Volume - Adult 2

​5ml

Volume - Adult 3

Bronchoalveolar lavage fluid

Cytomegalovirus Avidity

Transport arrangements
Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)
Sample storage arrangements
Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.
Special instructions for collection
Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.
How to request
​This is not a test that can be requested by user. This test is done as part of CMV diagnostic algorithm, often on stored samples in the Laboratory. Please contact Virology to request testing virology.advice@nhslothian.scot.nhs.uk
Availability
​Weekdays 08.30 - 17.00
Anticipated turnaround
​5 days
What happens if the result is positive or abnormal
Low avidity samples in Pregnant women would be phoned to relevant obstetrician. Referring hospital would be contacted with low avidity result to ensure clinical context is understood.
Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information
​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.
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Volume - Child 1

​1-2ml

Volume - Adult 1

​4.9ml

PNH Screen

Transport arrangements

​Sample MUST be received within 48 hours of collection

Sample storage arrangements

​Room Temperature

How to request

​TRAK/Request Form

Availability

​Monday-Friday (Samples must arrive by 3PM on a Friday)

Anticipated turnaround

​14 days

What happens if the result is positive or abnormal

​Requesting clinician will be contacted via telephone or email. Please ensure details are included on request.

Static information/disclaimer

This test is not currently accredited to ISO 15189:2012

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Volume - Adult 1

​2.7ml Peripheral blood

Additive - Adult 1

​EDTA

CD4/CD8 Counts

Transport arrangements

​Sample MUST be received within 48 hours of collection

Sample storage arrangements

​Room Temperature

How to request

​TRAK/Request Form

Availability

Samples are batched Tuesday-Friday afternoons.  Samples MUST arrive in WGH immunophenotyping laboratory by 1pm on a Friday to ensure appropriate processing.

Anticipated turnaround

​48 Hours

What happens if the result is positive or abnormal

​Requesting clinician will be contacted via telephone or email. Please ensure details are included on request.

Static information/disclaimer

This test is accredited to ISO 15189:2012

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Volume - Adult 1

​2.7ml Peripheral blood

Additive - Adult 1

​EDTA

CD19 Count

Transport arrangements

​Sample MUST be received within 48 hours of collection

Sample storage arrangements

​Room Temperature

How to request

Request Form

Availability

Samples are batched Tuesday-Friday afternoons.  Samples MUST arrive in WGH immunophenotyping laboratory by 1pm on a Friday to ensure appropriate processing.

Anticipated turnaround

​48 Hours

Static information/disclaimer

This test is accredited to ISO 15189:2012

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Volume - Adult 1

2.7 ml Peripheral blood

Additive - Adult 1

​EDTA

Lymphocyte Subsets

Transport arrangements

​Sample MUST be received within 48 hours of collection

Sample storage arrangements

​Room Temperature

How to request

​TRAK/Request Form

Availability

Samples are batched Tuesday-Friday afternoons.  Samples MUST arrive in WGH immunophenotyping laboratory by 1pm on a Friday to ensure appropriate processing.

Anticipated turnaround

​48 Hours

What happens if the result is positive or abnormal

​Requesting clinician will be contacted via telephone or email. Please ensure details are included on request.

Static information/disclaimer

This test is accredited to ISO 15189:2012

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Volume - Adult 1

​2.7ml Peripheral blood

Additive - Adult 1

​EDTA

Lymphoid Panel

Transport arrangements

Sample MUST be received within 48 hours of collection

Sample storage arrangements

​Room Temperature

How to request

​Request form

Availability

​Monday-Friday (Samples must arrive by 3PM on a Friday)

Anticipated turnaround

​14 days

What happens if the result is positive or abnormal

​Requesting clinician will be contacted via telephone or email if requested. Please ensure details are included on request form.

Static information/disclaimer

This test is accredited to ISO 15189:2012

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Volume - Adult 1

​4-5ml Bone marrow

Volume - Adult 2

​2.7 ml Peripheral blood

Volume - Adult 3

​2ml Minimum volume (CSF, Pleural or Ascitic Fluid)

Additive - Adult 1

​EDTA

Additive - Adult 2

​EDTA

Additive - Adult 3

​No additive

Acute Leukaemia Panel

Transport arrangements

​Sample MUST be received within 48 hours of collection

Sample storage arrangements

​Room Temperature

How to request

​Request form

Availability

​Monday-Friday (Samples must arrive by 3PM on a Friday)

Anticipated turnaround

​14 days

What happens if the result is positive or abnormal

​Requesting clinician will be contacted via telephone or email. Please ensure details are included on request form.

Static information/disclaimer

This test is accredited to ISO 15189:2012

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Volume - Adult 1

​4-5ml Bone marrow

Volume - Adult 2

​2.7ml Peripheral blood

Additive - Adult 1

​EDTA

Additive - Adult 2

​EDTA

Kleihauer

Transport arrangements
​No special transport arrangements are required. If part of an Rh programme / suitability testing, a sample from the baby should be sent at the same time.
Sample storage arrangements
​Stored at 4°;c
Special instructions for collection

​If part of an Rh programme / Suitability testing, the maternal sample should be taken after a period of 40 minutes post delivery to allow the feotal red cells to be fully distributed within the maternal circulation. If a Group and Save is also required, two maternal samples must be sent as the sample intended for Kleihauer testing cannot be centrifuged.

 

NHS Lothian operates a Zero Tolerance approach in relation to blood sample acceptance criteria. Errors in patient identification and sample labelling may lead to ABO-incompatible transfusions.

The demographics on the samples MUST be hand written, legible and MUST match exactly to the accompanying request form. Samples labelled with an addressograph or where evidence of an addressograph have been attached will be discarded. Samples with errors or where patient core identifiers have been obliterated will be discarded.

Sample Labelling

The following patient identifying data and sampler signature is mandatory -

  • CHI number (or Hospital Number where no CHI number is available - See CHI exceptions)*
  • Surname
  • Forename
  • Date of Birth
  • Signature

Sample Labelling for Unknown Patients

  • Surname / Forename = UNKNOWN
  • Temporary Identification Number = beginning with 700
  • Gender
  • Sample dated and signed

Once patients details become known, a new sample must be sent to the laboratory

Request Form Labelling

Addressograph labels are acceptable for request forms. If the form is handwritten then the information must be clear, legible and MUST contain the following data identifiers -

  • Surname
  • Forename
  • Date of Birth
  • CHI Number (See CHI exceptions)*
  • Name and signature of the person taking the sample
  • Name of the requesting clinician. (For component requests, this is the Doctor or authorised Nurse that has prescribed the transfusion)
  • Clinical details are desirable but are not essential

*CHI Exceptions

Not all patients will have a CHI number. If the patient is a genuine CHI exception then the Hospital number is acceptable and MUST be used. A CHI number may not be available in the following circumstances -

  • Foreign visitors
  • Patients from England, Wales and Ireland
  • Patients not registered with a GP in Scotland
  • Patients currently remanded within Her Majesty's Prisons
  • Patients in the armed forces
  • Newborn infants <3 days old.

A MINIMUM of 2.0ml of blood is required for adult specimens. For paediatric patients, please refer to the link below for specimen types and volume ranges.

 

 

 

How to request

​Electronic ordering is not available for Blood Transfusion tests. All tests are ordered via request form which must then be sent to the laboratory along with the appropriate sample(s).

Request forms can be obtained from the Blood Transfusion Laboratory.

Availability

​Monday - Friday: Routine Service 09:00 - 16:00

Saturday: Routine Service 09:00 - 13:00

Sunday: Not available - Testing will be performed the following Monday morning.

Anticipated turnaround
​Maximum of 72 hours
What happens if the result is positive or abnormal

​The amount of Anti-D Immunoglobulin required post FMH is dependant upon the volume of foetal red cells determined to be present in the maternal circulation. The number of foetal and maternal cells are counted and then expressed as a calculation of FMH in mLs.

FMH of >2mL are forwarded to SNBTS Gartnavel for confirmation by Flow Cytometry. If the FMH is >4.0mL, a second sample will be requested at 72 hours post IM administration of Anti-D Immunoglobulin or 48 hours post IV administration.

If a patient is discharged before the result of the Kleihauer is available then a standard dose of Anti-D can be issued. If further anti-D is required, the clinical team will be contacted.

 

General additional information
  • ​False positive results may be obtained where a woman has a high level of foetal haemoglobin (HbF).
  • Decisions made regarding the dosage of Anti-D Ig required in cases of massive Feto-Maternal Haemorrhage should be made once the result has been confirmed by Flow Cytometry.
  • Seperate samples should be received for maternal blood grouping / antibody screening and Kleihauer testing.
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Container_Child1
Volume - Child 1

​4.5mL

Additive - Child 1

​EDTA

Volume - Adult 1

4.5ml

Additive - Adult 1

​EDTA

NPM1

Transport arrangements

Specimens should ideally arrive within 24 hours of collection (maximum of 48 hours) and should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 3 working days.  See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

NPM1 gene mutation analysis performed for all patients diagnosed with AML based on immunophenotyping results via a reflex testing strategy.


Mutation in the NPM1 gene is observed in approximately 30% of AML cases and is frequently associated with a normal karyotype. The presence of an NPM1 mutation in the absence of a FLT3 internal tandem duplication  is associated with a more favourable prognosis in AML.


FLT3 (ITD and D835) mutation detection is also available for AML patients at diagnosis. 


For patients carrying an NPM1 mutation for whom molecular monitoring will be required, identification of the mutation type will be determined by next generation sequencing or Sanger sequencing.


Molecular monitoring for NPM1 positive AML is available for types A, B & D.

For NPM1 MRD monitoring, refer to the separate entry in the test directory, found here


For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us.

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Volume - Adult 1

2 x 9ml peripheral blood, bone marrow specimen or FFPE tissue.

Total volume required is 10-15mL.  Sample tube can be any size as long as it is EDTA anti-coagulated.

Additive - Adult 1

​EDTA

FLT3

Transport arrangements

Specimens should ideally arrive within 24 hours of collection (maximum of 48 hours) and should be sent to the following address:

Western General Hospital

Haematology/ Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

See also Specimen transportation.​

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​ 

 

Testing may be performed by reflex from immunophenotyping.

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 3 working days. See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

FLT3 (both ITD and point mutation D835) gene mutation analysis performed for all patients diagnosed with AML based on immunophenotyping results via a reflex testing strategy.  

FLT3 mutation is not a reliable marker for MRD monitoring within AML

FLT3 is the most commonly mutated gene in AML and detected in one third of AML cases. Internal tandem duplications (ITDs) in the juxtamembrane domain of FLT3 are seen in 25% of AML cases, while others show mutations in the tyrosine kinase domain of FLT3 gene.

Where FLT3 ITD mutation detected, the mutant allele ratio of the ITD mutation can be calculated. The presence of a high level of FLT3 ITD mutation in the absence of a NPM1 mutation is associated with an adverse prognosis in AML.

NPM1 mutation detection​ is also available for AML patients at diagnosis.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us​.​

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Volume - Adult 1

2 x 9ml peripheral blood, bone marrow specimen or FFPE tissue.

Total volume required is 10-15mL.  Sample tube can be any size as long as it is EDTA anti-coagulated

Additive - Adult 1

​EDTA

MYD88 p.L265P Mutation testing

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  There is no time limit for FFPE samples.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

Requests for testing FFPE tissue should be sent to the Molecular Pathology Service at RIE with a completed HMDS test request form. 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days.  See results.

Static information/disclaimer

All sample with a CLL score <2 via Immunophenotyping will be tested for MYD88 p.L265P mutations via a reflex testing strategy

General additional information

This test uses an allele specific real time PCR for the identification of the MYD88 p.L265P variant to help aid in the differentiation of low grade B Cell lymphoplasmacytic lymphoma (LPL), Waldenström Macroglobulinaemia (WM) and IgM monoclonal gammopathy of undetermined significance (MGUS) from marginal zone lymphomas. The MYD88 p.L265P mutation can also be used to distinguish the different sub-types of diffuse large B cell lyphomas (DLBCL); the L265P mutation being found in activated B cell like DLBCL, but rarely in the germinal centre like DLBCL. See testing.

This test is accredited to ISO 15189:2012

For clinical advice on appropriate investigations and advice for the interpretation of test results, please see contact us​.

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Volume - Adult 1

​5ml peripheral blood, bone marrow specimen or FFPE tissue

Additive - Adult 1

​EDTA

MRD monitoring TCF3::PBX1

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  Specimens should arrive no later than 3.30pm on Friday.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days.  See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

This assay is for MRD monitoring and only suitable if the TCF1::PBX1 fusion has previously been detected.

Please see ALL panel testing for diagnostic samples.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us​.

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Volume - Adult 1

​10-15ml Peripheral blood or bone marrow specimen

Additive - Adult 1

​EDTA

MRD monitoring ETV6::RUNX1

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  Specimens should arrive no later than 3.30pm on Friday.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.

 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days. See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

This assay is for MRD monitoring and only suitable if the ETV6::RUNX1 fusion has previously been detected.

Please see ALL panel testing for diagnostic samples.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us.​

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Volume - Adult 1

​10-15ml Peripheral blood or bone marrow specimen

Additive - Adult 1

​EDTA

MRD monitoring CBFB::MYH11

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  Specimens should arrive no later than 3.30pm on Friday.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at ​room temperature. See specimen requirements.

How to request

​Please refer to our detailed requesting instructions. The HMDS request form can be located here.

 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days. See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

This assay is for MRD monitoring and only suitable if the CBFB::MYH11 fusion has previously been detected.

Please see AML panel testing for diagnostic samples.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us​.

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Volume - Adult 1

​10-15ml Peripheral blood or bone marrow specimen

Additive - Adult 1

​EDTA

MRD monitoring PML::RARA

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  Specimens should arrive no later than 3.30pm on Friday.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.

How to request

Please refer to our detailed requesting instructions. The HMDS request form can be located here.

 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days. See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

This assay is for MRD monitoring and only suitable if the PML::RARA fusion has previously been detected.

Please see AML panel testing for diagnostic samples.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us.

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Volume - Adult 1

​10-15ml Peripheral blood or bone marrow specimen

Additive - Adult 1

​EDTA

ZnT8

How to request

​Trak, ICE, Clinical Immunology request form.

Diabetic screen tests can only be requested via Hospital referrals.

Availability

​Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround

​21 Days

 

General additional information

ZNT8 is a major autoantigen in development of autoimmunity against pancreatic β-cells leading to type 1 diabetes (T1D) in children and young adults (Wenzlau et al., 2007). A high amount of ZNT8 autoantibodies are frequently detected in the early stage of T1D. With disease progression, ZNT8 autoantibody titers drop significantly.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

MRD monitoring RUNX1::RUNXT1

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  Specimens should arrive no later than 3.30pm on Friday.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU

See also Specimen transportation.​

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

Availability

​Monday - Friday 9am-5pm

Anticipated turnaround

​Results should be expected within 10 working days.  See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

This assay is for MRD monitoring and only suitable if the RUNX1::RUNX1T1 fusion has previously been detected.

Please see AML panel testing for diagnostic samples.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us

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Volume - Adult 1

​12 ml Peripheral blood or bone marrow specimen

Additive - Adult 1

​EDTA

TP53

Transport arrangements

Specimens should ideally arrive within 24 hours of collection (maximum of 48 hours) and should be sent to the following address:

 

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be store at room temperature. See specimen requirements.

How to request

Please refer to our detailed requesting instructions. The HMDS request form can be located here.

 

Availability

​Monday-Friday 9am-5pm

Anticipated turnaround

​Results should be expected within 15 working days. See results.

What happens if the result is positive or abnormal

​Requesting clinician will be contacted via telephone or email. Please ensure details are included on request form.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

For assessment of TP53 loss (del17p) by FISH, please refer to the South East Scotland Cytogenetics Service.

CLL samples contain a mixture of leukaemia and non-leukaemia cells.  Since TP53 mutations are acquired within leukaemia cells, they will not be present within non-CLL cells within the sample. Therefore, it is important to be aware of the approximate percentage of leukaemia cells within the sample. The assay carries a limit of detection of 15% and therefore a low level TP53 mutation may not be detected by this approach.

For samples with a likely low level leukaemia percentage, Lymphoprep isolation of mononuclear cells will be performed. Hence, please inform the laboratory, where possible, of the total lymphocyte count and total white cell count in the sample

​TP53 mutation assessment is performed using Sanger sequencing to assess and identify sequence variants in exons 2a, 2d, 3, 4b, 5, 6, 7, 8, 10 and 11 of the TP53 gene (LRG_321 specific exon numbering). In most cases, a TP53 mutation is associated with loss of chromosome 17p [del17p]. However, some patients may carry a TP53 mutation without accompanying loss of chromosome 17p. Mutations in the TP53 gene are associated with chemotherapy resistance and poor prognosis in patients with CLL.

Assessment of the IGHV mutation status can also be performed.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us​.

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Volume - Adult 1

2 x 2.7ml peripheral blood or bone marrow specimen

Additive - Adult 1

​EDTA

Nutritional screen

General additional information

​Nutritional / micronutrient screen includes: copper, manganese, selenium, zinc and vitamins A, B1, B2, B6, E.

Please send 2x lithium heparin NON GEL tubes (or special trace metal tubes) to perform the full screen.

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Legionella Spp

Transport arrangements

​Inter -site van shuttle service, GP van service, External Hospital van service, Couriers, Hospital porter collection, (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS).

Sample storage arrangements

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2 - 8 oC is preferrable to storage at room temperature. Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbant material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

​Use appropriate Virology Request Form or TRAK referral letter. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

​Weekdays 08.30 - 17.00

Weekends 09.00 - 16.00

Anticipated turnaround

​2 days

What happens if the result is positive or abnormal

​Positive results are notified to the Duty Bacteriologist to inform relevant team and are available in the patient's records.

General additional information

​Test is available 7 days per week. Same day results are available when sample is received into the laboratory by 09.00.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

​2 mls

Additive - Child 1

​Sputum to be taken into sterile universal container

Volume - Adult 1

​2 mls

Additive - Adult 1

​Sputum to be taken into sterile universal container

Chlamydia Spp (Respiratory)

Transport arrangements

​Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS).

Sample storage arrangements

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature. Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbant material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

NHS Lothian users: Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). 

Use specific request form only if TRAK or ICE ordering system is unavailable.

 

 

Users outside NHS Lothian, use NPEx or request form:

 

 

 

Availability

​Weekdays 08.30 - 17.00

Weekends 09.00 - 16.00

Anticipated turnaround

​2 days

What happens if the result is positive or abnormal

NHS Lothian- Duty Microbiologist will contact the clinical team to discuss the result and any infection control related issues where appropriate.​

Users outside NHS Lothian- result released by the BMS to local Clinical Microbiology Team for action.

All positive results are confirmed by PCR and sequencing to determine Chlamydia Spp.

General additional information

​Test available 7 days per week. Same day results available when sample is received into the laboratory by 09.00.

Please contact loth.molmicro@nhs.scot for all non-urgent clinical enquiries.

Volume - Child 1

​2 mls

Additive - Child 1

Nasopharyngeal Secretions taken into Conical Centrifuge Tube

Volume - Adult 1

​2 mls

Additive - Adult 1

​Sputum to be taken into sterile universal container

Mycoplasma genitalium or Ureaplasma spp

Transport arrangements

Mycoplasma genitalium is a sexually transmitted infection that is often asymptomatic. In a minority of people, it can cause dysuria, discharge, itch, pain and bleeding. Urogenital Ureaplasma colonisation or infection is usually asymptomatic there is no testing available. 

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

High vaginal swabs – Send to RIE Molecular lab for M. genitalium PCR; must be swab in CT / GC Transport Medium (not VTM or charcoal/gel swab) - no other Mycoplasma spp/Ureaplasma spp testing is possible in Scotland, or at national reference laboratory, on genital samples.


Urine – Do not send for testing from females – not possible to test anywhere. Mycoplasma genitalium testing from male urines only by RIE Molecular lab.


Neonate respiratory samples – Send neat sample to UKHSA Colindale for M. hominis/Ureaplasma spp PCR


Sterile site fluids e.g. pelvic abscess fluid – Send neat sample to GOSH for 16S which will pick up Mycoplasma/Ureaplasma spp plus any other bacteria present. If Mycoplasma/Ureaplasma specifically sought ONLY in a sterile site fluid – discuss with UKHSA Colindale ref lab.

How to request

Via Trak ("Mycoplasma genitalium PCR"), or by request form. 

Availability

Monday - Friday 0900-1700 (RIE)

Anticipated turnaround

Up to 7 working days

What happens if the result is positive or abnormal

​All positive samples are referred to Scottish STI Reference Laboratory (based at the RIE) for determination of antibiotic resistance by sequencing.

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Container_Child1
Volume - Child 1

​As adult

Volume - Child 2

​As adult

Additive - Child 2

​as adult

Volume - Adult 1

​> 0.5 ml ​Urine (for males only)

Volume - Adult 2

​Vaginal swab in Chlamydia/Gonorrhoea medium (for females)

Additive - Adult 2

​Liquid included in container should be retained

Metanephrine /metadrenaline (plasma)

Transport arrangements

UNSTABLE HORMONES: Bloods should be placed on ice and transported to the laboratory immediately.

Special instructions for collection

Patient preparation: Ideally patients should be seated or supine (30minutes) prior to sampling. Dietary catecholamine intake has little effect on metanephrine and normetanephrine but may have significant impact on 3-methoxytyramine. Overnight fasting and avoidance of catcholamine rich foods (eg bananas, plums, pineapples, walnuts, tomatoes, avocados, aubergine, alcoholic drinks, vinegar) is advised if measurement of 2-methoxytyramine is likely to be important as a marker of dopamine secretion.

How to request

Please notify the laboratory prior to sample collection.

Availability

Normal working hours only.

Anticipated turnaround

Please see Glasgow website for details.

General additional information

Plasma Metanephrine includes normetanephrine, metanephrine and 3-methoxytyramine. A local assay for 24 hour Urinary Metadrenaline is available and for most patients this should be requested in the first instance. Urinary and plasma metadrenalines have similar specificity and sensitivity for phaeochromocytoma.

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Container_Child1
Volume - Adult 1

​2.7 mL

Acquired FISH (PETS)

Transport arrangements

​Courier or Taxi or pre-arranged drop off

Sample storage arrangements

Fridge

How to request

​Referral form from laboratory main website

Availability

​Mon-Fri

Anticipated turnaround

​10-28d

What happens if the result is positive or abnormal

​All reports sent to referring clinician

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Leptospira serology and PCR

Transport arrangements

Useful: This test is performed at the Rare and Imported Pathogens laboratory (RIPL). They provide a panel of testing based on geography of travel and clinical symptoms so it is imperative these are provided at the time of requesting, otherwise these samples will not be processed. Unless you have a specific reason for testing for a single agent like Leptospirosis, or are very familiar with current disease prevalence, we suggest that you provide as many clinical and travel details as possible and allow RIPL to select the appropriate panel of tests. 

​Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection
If the sample is taken within 7 days of symptom onset, Leptospira PCR can be done on the same serology sample.
 
You can also request a Leptospira PCR on a urine sample in a universal container (not Boric acid) up to 21 days after symptom onset, though it must be accompanied by a serum/clotted blood sample (in a brown tube). EDTA blood (red tube) is not required for Leptospira PCR.
How to request

Via Trak ("Microbiology serology") then specify in clinical details re: Leptospirosis serology and PCR, or by  request form. Ensure date of onset of symptoms, travel details and dates and clinical symptoms are supplied in the request.

Availability

Monday - Friday 0900-1700 (RIE). Will be processed and sent to reference lab.

Anticipated turnaround

From receipt in RIPL: PCR - 5 working days. Serology - 7 working days. Microscopic agglutination test - 12 working days.

What happens if the result is positive or abnormal

​A report will be issued. The result may be telephoned or e-mailed if clinically appropriate.

General additional information

Note that Leptospirosis testing will always be performed routinely on returning travellers where travel and clinical details compatible with Leptospirosis are provided to RIPL. Therefore, for returning travellers, it is not necessary to submit a Leptospirosis request form in addition to the standard RIPL request form (P1). For further information please refer to the RIPL Manual.

Container_Adult1
Container_Child1
Volume - Child 1

​1 - 2 mls

Volume - Adult 1

​4.9 mls

Galactomannan

Transport arrangements

​As soon as practicable

Sample storage arrangements

Refrigerated at 4 to 6 degrees

How to request

​Via TRAK, request form or GP order comms

Availability

This is a referred test so should be sent Monday - Friday 9am to 5 pm.

Anticipated turnaround

​14 days.

General additional information

This test is sent to the Mycology Reference Laboratory in Manchester. EDTA bloods are NOT suitable.

Guidance on use of  fungal antigen tests is available from IDSA:  

https://academic.oup.com/cid/article/63/4/e1/2595039

For chronic pulmonary forms of aspergillosis, Aspergillus antibodies are used instead of galactomannan and β-D-glucan tests. These tests are available from the Immunology laboratory.

For chronic cavitary pulmonary aspergillosis and aspergilloma, request Aspergillus IgG antibody test:

https://www.edinburghlabmed.co.uk/TestDirectory/Pages/Display.aspx?tID=4590

For allergic bronchopulmonary aspergillosis (ABPA), request Aspergillus IgE antibody and total IgE tests:

https://www.edinburghlabmed.co.uk/TestDirectory/Pages/Display.aspx?tID=4589

Serum and BAL galactomannan is recommended as an accurate marker for the diagnosis of Invasive Aspergillosis  (IA)  in adult and paediatric patients when used in certain patient subpopulations (haematologic malignancy, HSCT) (strong recommendation; high-quality evidence).

Galactomannan is not recommended for routine blood screening in patients receiving mould-active antifungal therapy or prophylaxis, but can be applied to bronchoscopy specimens from those patients (strong recommendation; high-quality evidence).

Where patients not on mould – active therapy are being screened, samples should be tested twice a week. Galactomannan is not recommended for screening in SOT recipients or patients with CGD (strong recommendation; high-quality evidence).

Serial monitoring of serum galactomannan can be used in the appropriate patient subpopulations (haematologic malignancy, HSCT) who have an elevated galactomannan at baseline, to monitor disease progression and therapeutic response, and predict outcome (strong recommendation; moderate-quality evidence).

Serum assays for β-D-glucan are recommended for diagnosing IA in high-risk patients (haematologic malignancy, allogeneic HSCT), but are not specific for Aspergillus (strong recommendation; moderate-quality evidence)

β-D-glucan has not been extensively studied in IA to predict outcome (weak recommendation; low-quality evidence

Endocarditis   Galactomannan and β-D-glucan tests may be used for diagnosis of invasive fungal infections such as endocarditis. Please discuss such cases with a Medical Microbiologist before ordering the test.

Pneumocystis pneumonia   β-D-glucan may be used for confirming the diagnosis of Pneumocystis pneumonia when pulmonary samples are not available. Please discuss such cases with a Medical Microbiologist before ordering the test.

Severe influenza infection   Patients with severe influenza are at increased risk for IA. Consider galactomannan testing of BAL in patients with influenza admitted to critical care. Serum galactomannan testing is also indicated but is less sensitive. A negative galactomannan result does not exclude IA. β-D-glucan testing of serum is a sensitive but non-specific test for invasive fungal infection, positive β-D-glucan tests unrelated to fungal infection are more likely during the first few days on the ICU and in patients with sepsis or receiving blood products or immunoglobulin therapy.

Please see current PHE guidance at:   

https://www.gov.uk/government/publications/seasonal-influenza-managing-cases-in-critical-care-units

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Volume - Child 1

5ml

Volume - Child 2

5ml

Volume - Child 3

Bronchoalveolar lavage fluid

Volume - Adult 1

5ml

Volume - Adult 2

​5ml

Volume - Adult 3

Bronchoalveolar lavage fluid

Adalimumab and antibody level

How to request

​Please send a completed 'Adalimumab Therapeutic Monitoring Request' form to the laboratory to ensure processing.

Anticipated turnaround

​21 days

General additional information

​An antidrug antibody level will be provided with the drug level.

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Infliximab and antibody level

How to request

Please send a completed 'Infliximab Therapeutic Monitoring Request' form to the laboratory to ensure processing.

Anticipated turnaround

​21 days

General additional information

​An antidrug antibody level will be provided with the drug level.

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Borrelia Serology

Transport arrangements

​No Special Requirements

Sample storage arrangements

​​No Special Requirements

Special instructions for collection

​On the rare occasions where investigation of CSF for Lyme disease is required there must be a paired serum and CSF sample taken on the same day to allow comparison of antibody levels. The sample must not be bloody. Please also send CSF for cell counts and protein and glucose. Please send at least 1 ml of CSF to Bacteriology.

How to request

Test can be orderd on TRAK or ICE or by form

Availability

Lyme antibodies are not detectable before 3 weeks post exposure and may take up to 10 weeks post exposure to develop.

Patients who present with symptoms consistent with Lyme disease (excluding recognised erythema migrans, see below) or non-specific symptoms after tick bite/exposure should be tested.

In order to avoid inappropriate testing which can lead to false positive results and poor management of patients, the following testing criteria are suggested by the Scottish Lyme Disease and Tick-borne Infections Laboratory (SLDTRL).

The following samples should NOT be tested:

1) No clinical details – results for samples with no clinical details cannot be interpreted.


2) Asymptomatic tick bite/ tick bite only – seek medical advice if become symptomatic.


3) Post treatment - monitor clinically. Serology cannot be used to assess treatment success.


4) Erythema migrans- treat empirically (as per NICE Guidelines). If there is doubt about the presentation of erythema migrans, please refer a serum sample for testing. Some clinicians are not familiar with the presentation of the rash and in these cases serology may be useful.

Anticipated turnaround

​3 Weeks

What happens if the result is positive or abnormal

​Patients with positive results from an NHS laboratory can be treated if uncomplicated Lyme disease. Complicated patients such as those requiring IV therapy for Lyme disease, or positive results from a non-NHS laboratory, or query chronic Lyme disease can be referred to the Regional Infectious Diseases Unit (RIDU, WGH) for advice on management.

General additional information

The SLDTRL Handbook is available on the Link below.

There is also useful guidance on the PHE website
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TB Quantiferon Gold 4 tube Assay

Transport arrangements

Utility: Quantiferon Gold is an interferon gamma release assay​. They are only useful to identify latent (non-active) TB infection. IGRAs measure interferon gamma released from sensitised cells on exposure to PPD. They are a measure of prior infection with MTB. They are more sensitive than the TB skin test as they are specific to certain antigens so don't respond to previous BCG vaccination or most non-tuberculous mycobacteria.

However it can't:

  • Rule in active TB (not specific enough)
  • Rule out active TB (not sensitive enough)
  • Differentiate between active and latent infection (positive in both)
  • Risk stratify likelihood of developing active TB in latent infection
  • Be used to assess treatment

Please see Respiratory TB Guidance for further information.

 Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, store at room temperature. Patient samples can be transported at ambient temperature.

Special instructions for collection

​To order tubes via PECOS the product number is 622222.

Gently invert each tube 10 times. Samples should reach laboratory within 16 hours of being taken. Alternatively, samples should be incubated upright at 37oC +- 1 for 16-24 hours. After incubation, samples may be held between 4 and 27oC for up to 3 days prior to centrifugation.

Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Via Trak ("Quantiferon Gold") or by request form. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

​Weekdays for receipt of specimens 08.30 – 19.00 and Saturday 09.00 – 14.00.

Anticipated turnaround

​10 days

What happens if the result is positive or abnormal

Positive results are notified to the TB Bacteriologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and incorrect volume of blood in each Quantiferon collection tube. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Only indicated for diagnosis of latent TB infection.

Please contact loth.microbiologyoffice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.
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Volume - Child 1

​0.8 -1.0 ml

Volume - Adult 1

​0.8 - 1.0 ml

Everolimus

Special instructions for collection

​Collect sample just before next dose.

Anticipated turnaround

​<28 days.

General additional information

​Available by prior arrangement with the laboratory only.

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Volume - Child 1

​1 mL

Additive - Child 1

​Potassium EDTA

Volume - Adult 1

​1 mL

Additive - Adult 1

​Potassium EDTA

Anti-Mullerian hormone (AMH)

How to request

​Paper request form

Availability

​Test run twice per week in batches.

Anticipated turnaround

​<5 days

General additional information

​Test available for certain patient groups only, by prior arrangement with the laboratory.

For further information on the potential for biotin interference please click here.

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Volume - Child 1

​0.5 mL

Additive - Child 1

​Lithium-heparin

Volume - Adult 1

​0.5 mL

Volume - Adult 2

​0.5 mL

Additive - Adult 1

​None

Additive - Adult 2

​Lithium-heparin

Apixaban Assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak. Note: this assay must be arranged through Haematology medical staff.

Availability

Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Please contact the laboratory for urgent samples outside of routine hours.

Anticipated turnaround

​1 day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telelphone/ bleep number.

General additional information

This assay must be arranged through the Haematology medical team. The results will be returned to the Haematology medical team for interpretation.

Volume - Child 1

1.4ml

Additive - Child 1

​Sodium citrate

Volume - Adult 1

3ml​

Additive - Adult 1

​Sodium citrate

GP1BA screen for detection of familial mutation (Platelet-type Von Willebrand Disease)

Transport arrangements

​Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

​Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

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Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

GP1BA Full Mutation for Platelet-type Von Willebrand Disease

Transport arrangements

​Lab van or 1st class post

Sample storage arrangements

​Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

​Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

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Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

Bernard Soulier screen for the detection of familial mutations

Transport arrangements

​Lab van or 1st class post

Sample storage arrangements

​Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

​Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

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Volume - Child 1

​A minimum volume of 1ml is required.

Volume - Adult 1

2.7ml​​​​​

Additive - Adult 1

​EDTA

Bernard Soulier Full Mutation (GP1BA, GP1BB & GP9)

Transport arrangements

​Lab van or 1st class post

Sample storage arrangements

​Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

​6-8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

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Volume - Child 1

​A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

NT-proBNP

Availability

​Normal working hours only.

Anticipated turnaround

2 weeks

General additional information

​The use of this test is currently being piloted in NHS Lothian by the heart failure team. Please note that NT-proBNP requests will only be processed during this pilot period if they have been authorised by the heart failure team. For any queries, please contact the Duty Biochemist to discuss.

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Volume - Adult 1

0.5 mL

Volume - Adult 2

0.5 mL

Volume - Adult 3

0.5 mL

Additive - Adult 1

​None

Additive - Adult 2

​Lithium-heparin

Additive - Adult 3

​Potassium-EDTA

EMA Binding

How to request

​Must be discussed and arranged with Haematology medical staff. Contact the Haematology Registrar on bleep #6466

Anticipated turnaround

​48 hours

What happens if the result is positive or abnormal

​Results are not phoned.

General additional information

​​This test is not accredited to ISO15189 at the Royal Infirmary of Edinburgh.

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Volume - Child 1

​1mL

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x tubes, each with >1.5mls

Additive - Adult 1

​EDTA

PD-L1 immunohistochemistry

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

​​​EGFR mutation analysis can be requested individually or as part of the lung cancer panel.

 
Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk.
 
Referral requests must be accompanied by a completed
 
PD-L1 immunohistochemistry has not been fully validated for use on cytology specimens. Biopsy material is preferred, however FNA specimens may be used if they are received fixed in formalin. Cytology specimens fixed in CytoLyt are not suitable for PD-L1 immunohistochemistry.
 
Please also refer to our detailed requesting instructions.
Availability

​​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​​An integrated Molecular Pathology report should be available within 14 days. See results.

Static information/disclaimer

This test is accredited to ISO 15189.

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

​Programmed death 1 (PD-1) is an immune inhibitory receptor that is widely expressed by cells of the immune system, especially cytotoxic T lymphocytes. Upregulation of the ligand PD-L1 prevents T-cell activation and contributes the evasion of tumour cells from immune recognition. Immune checkpoint inhibitors such as nivolumab and pembrolizumab are monoclonal antibody therapies that target PD-1 on the patient’s T-cells, thereby blocking PD-1/PD-L1 interaction and preventing tumour cells from inactivating the local cytotoxic T-cell response.

Upregulation of PD-L1 expression in tumour cells is demonstrated by immunohistochemistry. The resulting tumour percentage score (TPS) is used to estimate the likelihood of a patient’s tumour responding to first line pembrolizumab therapy.

Analysis of PD-L1 expression is carried out as an extension to the lung cancer testing panel, which also includes EGFR and KRAS mutation and ALK and ROS1 gene rearrangement analysis.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

EGFR mutation analysis (blood)

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). Please be aware that blood samples for cfDNA analysis must not be refrigerated and that any tube other than those specified above cannot be accepted for analysis.

Appropriate tubes, request forms and instructions for collection are available on request.

How to request

​All requestors, both internal and external to NHS Lothian, will need to provide a completed request form for cfDNA analysis.

 

Please note that this test is primarily for EGFR mutation analysis for confirmation of TKI resistance mutations but may also be requested where biopsy is not possible. For EGFR mutation analysis for stratification of patients for first line EGFR tyrosine kinase inhibitor therapy, please see EGFR mutation analysis (FFPE).

Please also refer to our detailed requesting instructions.
Availability

​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​An integrated Molecular Pathology report should be available within 5 working days. See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

Please note, alternative methodologies may be used. Full details will be included in all reports.

General additional information

​Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) are currently used as first line treatment for patients with advanced metastatic non-small cell lung cancer (NSCLC). Somatic mutations in exons 18 to 21 of the EGFR gene are used to predict response to EGFR TKI therapy.

Often following a period of EGFR TKI therapy, patients will relapse as a result of emergence of mutations conferring resistance, in particular a c.2369C>T p.T790M mutation in exon 20 of the EGFR gene. Patients whose tumours harbour this T790M mutation are eligible for treatment with the third-generation TKI osimertinib and a change in therapeutic strategy may be indicated. Although biopsy remains the preferred material for EGFR mutation analysis, it is possible to detect mutations in cell-free tumour DNA (cfDNA) extracted from peripheral blood; but with reduced sensitivity. Due to the lower sensitivity a negative result cannot exclude the presence of a mutation and a biopsy is strongly recommended if clinically appropriate.

Molecular Pathology use the COBAS® EGFR mutation kit (Roche Diagnostics), which can detect 41 mutations in exons 18-21 of the EGFR gene: 30 deletions and complex mutations in exon 19; c.2369C>T p.(Thr790Met); c.2303G>T p.(Ser768Ile); c.2573T>G or c.2573_2574delTGinsGT p.(Leu858Arg); c.2155G>A p.(Gly719Ser); c.2156G>C p.(Gly719Ala); c.2155G>T p.(Gly719Cys); and 4 insertions in exon 20. The assay detects 86.7% of known mutations in exons 18 to 21 as listed in the Catalogue of Somatic Mutations in Cancer.

EGFR mutation analysis (of FFPE tissue samples) is also carried out as part of the lung cancer testing panel, which also includes KRAS mutation analysis, PD-L1 expression and detection of ALK and ROS1 gene rearrangements.

 
For clinical advice on appropriate investigations, please contact our Molecular Pathology team.
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​2 x 8.5ml 

Antenatal Haemoglobinopathy Screen

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Special instructions for collection

A Full Blood Count is always performed alongside the Haemoglobinopathy screen.

How to request

​The Family Origin Questionairre (FOQ) form MUST be completed

Availability

Monday - Friday: routine service 09:00 - 17:00. Test not available during restricted service.

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

The Laboratory will inform the Foetal Medicine Midwives any abnormal results, for approriate follow-up.

General additional information

Blood transfusion may make interpretation unreliable. If a haemoglobinopathy cannot be characterised then further studies may be undertaken.

This assay detects the presence of the abnormal haemoglobins, HbC, HbD, HbE, HbS and other rarer variants. The quantitation will be reported as appropriate. ​

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Volume - Adult 1

>1.5ml

BK PCR

Transport arrangements
Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)
 
Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature

Special instructions for collection

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oc is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00
 
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

​Result authorised in Apex; significant results phoned by Duty Virologist

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.
 

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

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Volume - Child 1

​1-2mls

Seasonal Corona Virus PCR (OC43, HKU1, NL63, 229E)

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

se appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

​Test carried out once per week on selected populations of patients

Anticipated turnaround

​8 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

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Volume - Child 1

​Throat swab

Preferred sample

Volume - Child 2
Bronchoalveolar lavage taken into a 20ml Sterile Universal Conainer
Volume - Child 3
​Nasopharyngeal Secretions taken into Conical Centrifuge Tube

Parvovirus B19 PCR

Transport arrangements
Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)
Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability
Weekdays 08.30 - 17.00
 
Weekends 9.00 - 16.00
Anticipated turnaround

​7 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

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Volume - Child 1

​1-2mls

Bocavirus PCR

Transport arrangements
Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)
Sample storage arrangements

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00 Weekends 9.00 - 16.00

Anticipated turnaround

​2 days

What happens if the result is positive or abnormal

​Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

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Volume - Child 1

​Throat swab

Preferred sample.

Volume - Child 2
​​Bronchoalveolar lavage taken into a 20ml Sterile Universal Conainer
Volume - Child 3
​Nasopharyngeal Secretions taken into Conical Centrifuge Tube

BRAF mutation analysis

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request
Testing for NHS Lothian patients can be requested by email to molecular.pathoogy@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.
 
Please also refer to our detailed requesting instructions.
Availability

​​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

Analysis by NGS and Pyrosequencing are all accredited to ISO 15189.

Please note, alternative methodologies may be used. Full details will be included in all reports.

General additional information

​​BRAF codon 600 mutations are present in 37 to 50% of melanomas. BRAF inhibitors (e.g. vemurafenib, dabrafenib) and/or MEK inhibitors have been approved for patients with metastatic melanomas harbouring BRAF codon 600 mutations.

There are two methods available for the detection of mutations in codon 600 of the BRAF oncogene: Next generation sequencing (NGS) and  PCR followed by pyrosequencing. The pyrosequencing assay can detect any somatic mutations in codons 600 and 601 of the BRAF oncogene. The NGS panel assesses a larger region of the BRAF gene, for the full regions covered by the NGS panel, click here

Melanin is a known inhibitor of PCR reactions which may lead to a higher than expected test failure rate in melanoma specimens (see factors known to affect Molecular Pathology testing).

BRAF mutation analysis is also used in colorectal cancer specimens as a prognostic indicator and to differentiate sporadic mismatch repair defects from inherited forms in screening for Lynch Syndrome, as well as in the diagnosis of thyroid cancer for cases with indeterminate cytology results.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

Mismatch repair testing

Transport arrangements

Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

Mismatch repair testing can be requested individually or will be performed reflexively for colorectal cancer patients as indicated below.

Testing for NHS Lothian patients can be requested by email molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.

 

Please also refer to our detailed requesting instructions.

 

Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 42 days (Lynch syndrome investigations), or 14 days for histological diagnosis or treatment stratification. See results.

Static information/disclaimer

Mismatch repair immunohistochemistry is accredited to ISO 15189.  Microsatellite instability analysis and MLH1 promoter methylation are currently undergoing accreditation to ISO 15189:2012

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

A defective DNA mismatch repair pathway is one mechanism of carcinogenesis in colorectal cancer. Such defects may be sporadic or inherited.  One well characterised inherited condition, known as Lynch Syndrome, results in predisposition to the development of colorectal and other cancers at a comparatively young age. Patients with Lynch Syndrome have a 40-80% chance of developing colorectal cancer, in most cases before the age of 50 and affected women have a 40-60% risk of developing endometrial cancers and 10-12% risk of developing ovarian cancer.

Although the risk of developing cancer in Lynch Syndrome is high, knowing the risks and getting appropriate treatment can save lives. Mismatch repair analysis can also inform treatment options and, in the case of tumours showing medullary morphology, be a useful adjunct to the histopathological diagnosis.

Analysis for a mismatch repair pathway defect is performed in all newly diagnosed colorectal cancer (CRC) patients in Scotland.  Additionally, analysis of mismatch repair pathway defects may be performed on endometrial or ovarian cancers.  Where a patient presents to clinical genetics and Lynch Syndrome is suspected, assessment for mismatch repair defects may be performed on other cancer types.   The test used is dependent on the neoplastic content of the specimen; i.e. a sample with <20% tumour cells is assessed using immunohistochemistry (IHC) for four mismatch repair proteins (MLH1, PMS2, MHS2, MSH6).  Samples with >20% neoplastic cell content will be assessed for microsatellite instability (MSI).  MMR IHC will also be carried out to confirm equivocal MSI results as well as to determine which MMR proteins are affected.  Both MMR IHC and MSI will be carried out on patient samples referred from Clinical Genetics where there is a strong clinical suspicion of Lynch Syndrome.

Patients whose cancers are found to have a defect within MSH2 & MSH6, PMS2 or MSH6 should be referred to clinical genetics for further assessment.  CRC specimens that have a loss of MLH1 expression are further assessed for the presence of a BRAF V600E mutation.  Coexistence of loss of MLH1 protein expression and the presence of a BRAF V600E mutation in CRC is indicative of a sporadic tumour, rather than one associated with Lynch syndrome, and thus these patients are not routinely referred to clinical genetics.

Where loss of MLH1 protein expression is identified (and no BRAF V600E mutation within CRC cases), assessment of the methylation status of the MLH1 promoter region is performed using a methylation specific ligation-dependent probe amplification (MS-MLPA) assay.  Methylation of the promoter region of MLH1 is indicative of a sporadic tumour while a lack of methylation is interpreted as being suspicious of Lynch Syndrome.  Therefore, if methylation is detected within the MLH1 promoter region, referral to clinical genetics is not advised.  Where no methylation of the MLH1 promoter region is identified but loss of MLH1 protein expression exists, the patient should referred to clinical genetics for further investigation.

In recent years rare cases of constitutional MLH1 hypermethylation together with a somatic mutation in the functional allele have been reported in Lynch Syndrome.  In situations where MLH1 methylation is detected in somatic tissue, MLH1 promoter methylation analysis is performed on “normal” (non tumour) DNA from the patient (when available) to determine whether the methylation is constitutional in nature.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

 

KIT and PDGFRA mutation analysis

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request
Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.
 
 
 
Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

Analysis by Sanger sequencing is accredited to ISO 15189.

The NGS test is accredited to ISO 15189.

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

​In gastrointestinal stromal tumours (GIST), the identification of KIT (exons 9, 11, 13 and 17) and PDGFRA (exons 12, 14, 18) mutations can aid histopathological diagnosis. In addition, KIT and PDGFRA mutations can help predict response to therapies including imatinib and sunitinib. KIT and PDGFRA mutation analysis is carried out by NGS or by Sanger sequencing.

A proportion of melanomas, most commonly acral and mucosal melanomas, also exhibit mutations in exons 9, 11, 13 and 17 of the KIT gene.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

NRAS mutation analysis

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

NRAS mutation analysis can be requested individually or as part of the colorectal cancer panel.

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.

 

Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

This pyrosequencing assay is accredited to ISO 15189. The NGS test is also accredited to ISO 15189:2012

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

NRAS is member of the RAS family of small GTPases and is related to KRAS. Like KRAS, the NRAS gene can be mutated in a number of different cancer types. NRAS mutation analysis is carried out using NGS or pyrosequencing to detect mutations in exons 2 or 3 (codons 12, 13, 59 and 61) of the NRAS oncogene, which account for the majority of clinically relevant ‘hot-spot’ mutations in colorectal cancer and some melanomas.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

MGMT promoter methylation analysis

Transport arrangements

​Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.

 

Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 7 days. See results.

Static information/disclaimer

This test is accredited to ISO 15189.

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

​O6-Methylguanine-DNA-methyltranferase (MGMT) is a DNA repair enzyme which is thought to repair DNA damage caused by alkylating chemotherapeutic agents such as temozolomide. Methylation of the MGMT gene promoter decreases its expression and has been found to correlate with longer survival of patients with high grade gliomas treated with temozolomide. MGMT promoter methylation is therefore measured in high grade gliomas to help predict a patient’s response to therapy.

MGMT promoter methylation analysis is carried out by PCR and pyrosequencing following bisulphite conversion of unmethylated DNA. The reported result is an estimate derived from the mean percentage of methylation at CpG sites 76 to 79.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

KRAS mutation analysis

Transport arrangements

Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

KRAS mutation analysis can be requested individually or as part of either the lung cancer panel or the colorectal cancer panel.

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.

 
Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

The pyrosequencing test is accredited to ISO 15189.  The NGS test is also accredited to ISO 15189:2012

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

​The KRAS protein is a small GTPase involved in regulation of cellular proliferation, survival and differentiation. It frequently occurs as a mutated activated form in a number of different cancer types. KRAS mutation analysis is carried out as part of the colorectal cancer and lung cancer testing panels.

KRAS mutation analysis is carried out using PCR followed by pyrosequencing or NGS to detect mutations in exons 2, 3 or 4 (codons 12, 13, 61, 117 and 146) of the KRAS oncogene, which account for the majority of clinically relevant ‘hot-spot’ mutations. In colorectal cancer KRAS mutation analysis is usually carried out in a panel with NRAS mutation analysis.

In lung cancer, codons 12, 13 and 61 account for the majority of clinically relevant KRAS mutations and are most commonly associated with adenocarcinomas from patients with a smoking history (approximately 40% incidence).

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

HER2 gene amplification

Transport arrangements

Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request
Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.
 
 
Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

This test is accredited to ISO 15189.

Please note: alternative methodologies may be used. Full details will be included in all reports.

General additional information

​Trastuzumab, in combination with cisplatin and capecitabine or 5-fluorouracil, is recommended as an option for the treatment of people with human epidermal growth factor receptor 2 (HER2) amplified metastatic adenocarcinoma of the stomach or gastro-oesophageal junction, who have not received prior treatment for their metastatic disease, and who have tumours expressing high levels of HER2 protein or with amplification of the HER2 gene.

HER2 expression is assessed by immunohistochemistry (IHC) using the Leica Oracle HER2 IHC system. Tumours exhibiting equivocal HER2 expression proceed to FISH analysis using a Vysis PathVysion HER2 DNA probe (Abbott Molecular) to identify HER2 gene amplification.

HER2 status is also used within Pathology to assess eligibility for trastuzumab therapy in breast cancer patients.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

EGFR mutation analysis (FFPE)

Transport arrangements

Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.

How to request

​​EGFR mutation analysis can be requested individually or as part of the lung cancer panel. EGFR mutation analysis may, in some circumstances, also be performed on cell-free tumour DNA (cfDNA) isolated from blood.

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk. Referral requests must be accompanied by a completed request form.
 
 
Please also refer to our detailed requesting instructions.
Availability

​​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

NGS and analysis by COBAS EGFR test are both accredited to ISO 15189.  

Please note, alternative methodologies may be used. Full details will be included in all reports.

General additional information

​Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) are currently used as first line treatment for patients with advanced metastatic non-small cell lung cancer (NSCLC). Somatic mutations in exons 18 to 21 of the EGFR gene are used to predict response to EGFR TKIs.

Molecular Pathology use an NGS panel or the COBAS® EGFR mutation kit (Roche Diagnostics) for the detection of EGFR variants.  Further details of the NGS panel and regions analysed can be found here.  The COBAS EGFR mutation kit  can detect 41 mutations in exons 18-21 of the EGFR gene: 30 deletions and complex mutations in exon 19; c.2369C>T p.(Thr790Met); c.2303G>T p.(Ser768Ile); c.2573T>G or c.2573_2574delTGinsGT p.(Leu858Arg); c.2155G>A p.(Gly719Ser); c.2156G>C p.(Gly719Ala); c.2155G>T p.(Gly719Cys); and 4 insertions in exon 20. The assay detects 86.7% of known mutations in exons 18 to 21 as listed in the Catalogue of Somatic Mutations in Cancer.

EGFR mutation analysis is carried out as part of the lung cancer testing panel, which also includes KRAS mutation analysis, PD-L1 expression and detection of ALK and ROS1 gene rearrangements.

For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

ALK gene rearrangement

Transport arrangements
Referral specimens should be sent directly to Molecular Pathology at the above address (see transport recommendations). For patients with pathology specimens held within NHS Lothian there is no need to arrange transport of specimens.
How to request

​ALK gene rearrangement analysis can be requested individually or as part of the lung cancer panel.

Testing for NHS Lothian patients can be requested by email to molecular.pathology@nhslothian.scot.nhs.uk.
 
Referral requests must be accompanied by a completed
 
Please also refer to our detailed requesting instructions.
Availability

​Monday - Friday. 09:00 – 17:00

Anticipated turnaround

​An integrated Molecular Pathology report should be available within 10 working days. See results.

Static information/disclaimer

ALK FISH is accredited to ISO15189.

ALK Immunohistochemistry is not currently accredited to ISO15189.

Please note, alternative methodologies may be used. Full details will be included in all reports.

General additional information

​The anaplastic lymphoma kinase (ALK) gene encodes a tyrosine kinase normally expressed in neuronal cells. The ALK gene can, by deletion or translocation, form a fusion protein, which is abnormally expressed in approximately 2 to 5% of patients with non-small cell lung cancer. The presence of ALK gene rearrangement predicts response to ALK inhibitor therapy.

Immunohistochemistry is carried out to detect the ALK fusion protein using the D5F3 clone (Cell Signaling). ALK gene rearrangement analysis is carried out by fluorescence in-situ hybridization (FISH).

Analysis of the ALK gene is carried out as part of the lung cancer testing panel, which also includes EGFR and KRAS mutation analysis, PD-L1 expression and detection of ROS1 gene rearrangments.

​For clinical advice on appropriate investigations, please contact our Molecular Pathology team.

Sweat Test

Special instructions for collection

Sweat collection
Arrange sweat tests with the Department of Respiratory Medicine. Sweat is collected from a small carefully cleaned area of skin stimulated by pilocarpine, and chloride concentration is measured. Properly performed, this test is valuable in the diagnosis of cystic fibrosis, but reliable results can only be obtained with care, experience and attention to detail. If insufficient sweat is collected, or if abnormal or intermediate results are obtained, a repeat sweat collection may be required.
General additional information

Interpretation

 
All Scottish newborns are screened for cystic fibrosis by immunoreactive trypsin, and a panel of common Scottish cystic fibrosis mutations. Positive results are confirmed by sweat testing. Patients of all ages with symptoms or signs suggestive of cystic fibrosis are also sweat tested, whether or not they have been screened as neonates.
 
Sweat chloride (mmol/L)
0-6months old: <30mmol/L
>6months old: < 40 mmol/L.
 
Children with cystic fibrosis have sweat chloride greater than 60 mmol/L. Normal or intermediate sweat chloride (30/40 – 60mmol/L) may be associated with some mild CFTR mutations. Abnormal results (chloride greater than 60 mmol/L), and intermediate results in the 30/40 - 60 mmol/L range, should always be followed up, by CF mutation analysis and or/ a repeat sweat test.
 
Sweat conductivity is analysed in addition to chloride, however chloride remains the diagnostic parameter. The minimum sweat volume required for reliable interpretation is 1g/m2/min. All collections over 10uL are analysed [Guidelines for the Performance of the Sweat Test for the Investigation of Cystic Fibrosis in the UK. 2nd edn 2014]

MPL exon 10

Transport arrangements

Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post.

Sample storage arrangements

Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight.

How to request

Request form, or can be added onto a previous JAK2 V617F sample via the MPN Mailbox: Molecular.MPN@nhslothian.scot.nhs.uk

Availability

Test not available during restricted service

Anticipated turnaround

28 days

What happens if the result is positive or abnormal

Genetic results will not be telephoned. They can be emailed if secure addresses are verified.

Static information/disclaimer

​This test is accredited to ISO 15189:2012​​​

General additional information

Variants in MPL exon 10 are tested for in patients with clinical details of “Essential Thrombocythaemia' or 'Myelofribrosis” and have previously tested 'Not Detected' for both JAK2 V617F and Calreticulin indel Mutations. The MPL exon 10 is screened using an HRM method, followed by direct sequencing for the confirmation and classification of any potential mutations detected. This HRM method is sensitive to approximately 5-10%.

See the relevant BCSH guidelines for further information:

https://b-s-h.org.uk/guidelines/guidelines/gpp-use-of-genetic-tests-to-diagnose-and-manage-patients-with-myeloproliferative-and-myeloproliferativemyelodysplastic-neoplasms-and-related-disorders/

Citrated anticoagulated venous blood or 150µl DNA may be sent instead of an EDTA specimen

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Calreticulin (CALR exon 9)

Transport arrangements

Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post.

Sample storage arrangements

Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight.

How to request

Request form, or can be added onto a previous JAK2 V617F sample via the MPN Mailbox: Molecular.MPN@nhslothian.scot.nhs.uk

Availability

Test not available during restricted service.

Anticipated turnaround

28 days

What happens if the result is positive or abnormal

Genetic results will not be telephoned. They can be emailed if secure addresses are verified.

Static information/disclaimer

​This test is accredited to ISO 15189:2012

General additional information

Mutations in Calreticulin Exon 9 are tested for in patients with Essential Thrombocythaemia or Myelofibrosis and have previously tested 'Not Detected' for JAK2 V617F. ​

Frameshift indels within exon 9 of CALR are detected by fragment analysis, supported with direct sequencing for any mutations detected. Fragment analysis has an estimated sensitivity of approximately 2%. Any samples which have no variants detected in CALR exon 9 proceed to testing for MPL exon 10 mutations by HRM and direct sequencing.

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JAK2 Exon12

Transport arrangements

Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post.​

Sample storage arrangements

Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight. ​

How to request

Request form, or can be added onto a previous JAK2 V617F sample via the MPN Mailbox: Molecular.MPN@nhslothian.scot.nhs.uk

Availability

Test not available during restricted service.​

Anticipated turnaround

28 days

What happens if the result is positive or abnormal

Genetic results will not be telephoned. They can be emailed if secure adresses are verified. ​

Static information/disclaimer

​This test is accredited to ISO 15189:2012​​​

General additional information

Variants in JAK2 Exon12 are tested for in patients with suspected “Polycythaemia vera?” and have previously tested 'Not Detected' for JAK2 V617F. The JAk2 Exon12 is screened using an HRM method, followed by direct sequencing for the confirmation and classification of any potential mutations detected. This HRM method is sensitive to approximately 5-10%.

 

See the relevant BCSH guidelines for further information:

https://b-s-h.org.uk/guidelines/guidelines/diagnosis-and-management-of-polycythaemia-vera/

Citrated anticoagulated venous blood or 150µl DNA may be sent instead of an EDTA specimen

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Vitamin K

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

How to request

Only available for cystic fibrosis patients or those on home parenteral nutrition. Please ensure this is written on form. Recommend a prothrombin time is performed in all adults for ?vitamin K deficiency.

Anticipated turnaround

28 days

General additional information

Vitamin K is light sensitive, please protect specimen from light.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

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Volume - Child 1

1 mL

Additive - Child 1

Lithium heparin

Volume - Adult 1

1 mL

Volume - Adult 2

1 mL

Additive - Adult 1

Lithium heparin (non gel)

Additive - Adult 2

Potassium EDTA

Oral Fluid Drugs of Abuse screen

Sample storage arrangements

​Refrigerate until transported to laboratory

Special instructions for collection

​How to collect saliva using the Sarstedt Salivette device:

1) Remove the top cap of the tube to expose the round sponge. Do not remove the holder that the sponge sits in.

2) Place the sponge in your mouth by tipping the tube so the sponge falls into your mouth. Do not touch the sponge with your fingers.

3) Keep the sponge in your mouth. Very gently chew and roll the sponge around your mouth for 1-2 minutes. Spit the sponge back into the inner sleeve of the tube. Do not touch the sponge with your fingers.

4) Replace the cap. Make sure cap is on tightly.

5) Label the Salivette tube with the patient's full name, date of birth and date/time of collection. Complete all details on the request form, including full name, date of birth, CHI or registration number, requesting location and clinician, time/date of collection and specimen type, requesting a drug screen.

How to request

​Oral fluid drugs of abuse can be requested on TRAK, GP ICE or using a standard blood science request form. Indicate the sample type as oral fluid.

Anticipated turnaround

7 days

What happens if the result is positive or abnormal

​Drugs are analysed by a specific tandem mass spectrometry method. Drugs are validated by the presence of quantifying ions and qualifying ions. Both of these must have a retention time that matches each other and the corresponding deuterated internal standard. Drugs at a level above its threshold level are reported as positive.

General additional information

The report will contain 7 core drugs:

- Opiate group (morphine, codeine, 6-mono-acetyl morphine (heroin metabolite), dihydrocodeine, oxycodone - individual drugs reported only when the group is positive)

- Amphetamine

- Cocaine (benzoylecgonine is also measure but not reported - it's presence confirms that cocaine has been metabolised by the liver)

- Methadone

- Benzodiazepine group (diazepam, temazepam, oxazepam, nitrazepam, nordiazepam (metabolite of diazepam and chlordiazepoxide - individual drugs are not reported)

- Gabapentin

- Pregabalin

- Buprenorphine

The following drugs are only reported when positive:

MDMA (ecstasy), methamphetamine, tramadol.

Novel 'street' benzodiazepines includes Alprazolam (Xanax) and Etizolam.

Drug threshold levels:

Morphine: 20µg/L when the only drug present, 10µg/L when 6MAM is positive. Morphine is a metabolite of both codeine and 6MAM and it's presence with these supports the consumption of codeine or heroin. Morphine only is also compatible with MST and other morphine preparations.

6MAM (heroin metabolite): 13µg/L

Codeine: 20µg/L (compatible with codeine but also acetyl codeine found in heroin)

Dihydrocodeine: 20µg/L

Oxycodone: 20µg/L (compatible with oxycodone, oxynorm, oxycontin)

Amphetamine, methamphetamine, MDMA: 30µg/L

Cocaine: 13µg/L The presence of cocaine metabolite (benzoylecgonine) indicates that cocaine has been consumed.

Methadone: 20µg/L

Gabapentin, Pregabalin, Tramadol: 40µg/L

Buprenorphine: 1µg/L. Note very high levels are seen if the sample is collected within a short time after sublingual administration of buprenorphine. Half life of buprenorphine varies widely from 2-24 hrs. Negative results can be seen in some patients on low dose (8mg/day) if the sample is collected more than 10 hours after a dose.

Prescription Benzodiazepines: 1µg/L

Novel 'street' benzodiazepines: Alprazolam (Xanax) and Etizolam: 1µg/L

 

Please contact Toxicologist (0131 242 6851) for further information and advice.

Volume - Child 1

​50µL

Volume - Adult 1

50µL

Midazolam

How to request

​Contact Duty Biochemist to discuss.

Anticipated turnaround

​Dependent on method of transport of sample. 48 hours from receipt in Cardiff.

General additional information

​Please note: this assay is not sensitive enough for use in brain stem death testing. It is possible for other medications to interfere with analysis. Please provide list of current medications with requests.

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Volume - Adult 1

​5.0 mL

Additive - Adult 1

​Potassium EDTA

Creatinine Clearance

Special instructions for collection

At start of the collection period the patient empties bladder and discards the sample. All urine must be collectedfor 24 hours. The patient must empty bladder at the end of the collection period and add this to the urine collection. A serum / plasma sample should be collected during the 24 hour period that the urine is collected.​

Availability

​Monday-Friday 9.00-17.00, Saturday 9.00-13.00

Anticipated turnaround

​2 days

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Tryptase

Special instructions for collection
Investigation of anaphylactic reactions would be better conducted with serial samples (minimum of three):
 
Sample 1 (to detect early peak levels with severe reactions) - as soon as possible, but do not delay management.
 
Sample 2 (detects peak level with typical reactions) - 1-2 hours after reaction.
 
Sample 3 (to measure baseline level) - 24 hours after reaction.
 
Note that it is essential that all samples and accompanying request forms state the time of the adverse reaction and also have the precise time and date of the sample so that the results can be interpreted in relation to the event.

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon to Fri

Anticipated turnaround
21 Days
 
 
What happens if the result is positive or abnormal

General additional information
Tryptase levels are used as an aid in the clinical diagnosis of systemic mastocytosis and mast cell activation events such as anaphylaxis.
Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Specific IgG Antibody against Fungal and Avian Precipitins

How to request

​Trak, ICE, Clinical Immunology request form

Availability

Normal working hours 9am-5pm Mon to Fri.

Anticipated turnaround
14 Days
 
 

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
a. Aspergillus Fumigatus
b. Budgerigar
c. Pigeon
e. Parrot - This test is no longer available

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Specific IgE

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround

21 Days

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
The following allergens can be tested for:
 
House dust mite
Egg white
Pork - Not available at the moment
Cow’s milk
Wheat
Cod
Coconut
Sesame 
Tuna
Peanut 
Soya
Salmon
Hazelnut
Brazil nut
Almond 
Crab
Shrimp
Gluten
Kiwi
Melon 
Banana
Pecan
Cashew
Pistachio
Lentil - Not accredited
Walnut
Pine nut
Honeybee venom
Common Wasp Venom 
Horse dander
Dog dander
Cat dander
Rape seed pollen
Penicilloyl G
Penicilloyl V
Ampicilloyl
Amoxicilloyl
Suxamethonium 
Latex
Mouse epithelium
 
Mouse Urine 
Rat epithelium
Rat urine
Aspergillus
Blue mussel
Omega-5-gliadin
 
 
 
 
Mixed Animal (cat, dog, horse & cow dander)
Mixed Grass Pollen (sweet vernal, rye, timothy, cultivated rye & velvet grass)
Mixed Nuts (peacan, cashew, pistachio & walnut)
Mixed Nuts (peanut, hazelnut, brazil nut, almond & coconut)
Mixed Fish (cod, shrimp, bluemussel, tuna & salmon)
Mixed Rodent (guinea pig, rabbit, hamster, rat & mouse)
Mixed Feathers (goose, chicken, duck & turkey)
Mixed Feather (budgerigar, canary, parakeet, parrot & finch)
Mixed Tree Pollen (Box-elder, silver birch, oak, elm & walnut)
Mixed Moulds (Penicillium notatum, Cladosporium herbarum, Aspergillus fumigatus & Alternaria alterata)
 

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Total IgE

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

​Normal working hours 9am-5pm Mon to Fri.

Anticipated turnaround
14 Days
 
 

What happens if the result is positive or abnormal

General additional information

​The measurement of total IgE levels has become well established in the investigation of allergic patients. Although IgE has the lowest concentration of all the Immunoglobulins, it has an extremely important role from a clinical standpoint because of its central involvement in allergic disorders. IgE is a monomer, with a molecular weight of 190,000 kDa and a serum concentration of 0.05 mg/dl. The serum concentration of IgE is significantly elevated in patients suffering from extrinsic asthma, hayfever and atopic eczema. IgE levels can also be raised in certain parasitic infections, some forms of immunodeficiency and bronchopulmonary aspergillosis.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Immunoglobulin G and Subclasses

Special instructions for collection

Serum samples only please.

How to request

All requests for this test must be made through Clinical Immunology on a Clinical Immunology request form.

Availability

Normal working hours Mon-Fri 9am to 5pm.

Anticipated turnaround
21 Days

What happens if the result is positive or abnormal

General additional information

Please refer to Sheffield Department of immunology for current accreditation information and reference ranges.

 

 

Volume - Child 1

4.9ml

Additive - Child 1

Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

Clotting activator/gel

Anti-Liver/Kidney Microsomal Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

​Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
14 Days

What happens if the result is positive or abnormal

​Reviewed and authorised by Consultant Immunologist.

General additional information
Tested along with GPC, AMA and SMA
 
Diagnosis of Type 2 autoimmune hepatitis in the young.
 
IIF using sections of rat kidney, liver and stomach.
LKM antibodies are strongly associated with Type 2 autoimmune hepatitis but are also found in a subset of patients with chronic hepatitis C infection.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting/activator gel

Anti-Smooth Muscle Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

​Normal working hours 9am-5pm Mon to Fri.

Anticipated turnaround
14 Days

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
Tested alongside GPC, AMA and LKM.
 
Anti-Smooth Muscle antibodies are associated with Type 1 autoimmune hepatitis and can also be seen in viral hepatitis, infectious mononucleosis, asthma, yellow fever and malignant tumours (carcinomas of the ovary, malignant melanoma) and they have been found in less than 2% of the normal population.
 
Indirect immunofluorescence (IIF) using rat liver, kidney and stomach tissue block. This antibody is measured on a combined liver, kidney and stomach section and so the results for Anti-Mitochondrial antibodies, Gastric parietal cell antibodies and Liver kidney Microsomal antibodies will also be reported.
 
 

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Mitochondrial Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround

14 Days for IIF (Anti-Mitochondrial antibody)

21 Days for ELISA (M2)

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
Tested alongside GPC, SMA and LKM
 
These antibodies are associated with primary biliary cirrhosis/ autoimmune liver disease.
 
Tested by Indirect immunofluorescence (IIF) using sections of rat liver, kidney and stomach. This antibody is measured on a combined liver, kidney and stomach section and so the results for anti-gastric parietal cell antibodies and anti-smooth muscle antibodies will also be reported. If AMA are observed the sera are further tested using an M2-specific ELISA.
Anti-Mitochondrial antibodies of the M2 type are present in at least 90% of patients with PBC where they are considered diagnostic but can also be present in other autoimmune diseases such as Sjogrens syndrome, autoimmune thyroid disease, SLE or polymyositis. Can be associated with anti-smooth muscle antibodies in PBC/CAH overlap.
Non-M2 AMA antibodies can also be associated with PBC (M4, M8 & M9) but may also be indicative of syphilis, connective tissue diseases, cardiomyopathy and drug-induced hepatitis. Please note that the laboratory does not subtype non-M2 anti-mitochondrial antibodies.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Gastric Parietal Cell Antibody

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround

14 Days

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
Tested alongside AMA, SMA and LKM.
 
Diagnosis of pernicious anaemia.
 
Indirect immunofluorescence (IIF) on rat gastric mucosa. This antibody is measured on a combined liver, kidney and stomach section and so the results for anti-mitochondrial antibodies, anti-smooth muscle antibodies and anti-liver kidney microsomal antibodies will also be reported.
Anti-Gastric Parietal cell antibodies may be detected following infection, in some normal individuals, in some organ specific autoimmune conditions (e.g autoimmune thyroid disease) as well as in pernicious anaemia.
PCA have also been reported in H.pylori-induced gastritis. The presence of these antibodies can be masked by anti-mitochondrial antibodies and so are not reported if the latter are present.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Nuclear Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
 

​14 Days

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
The major reason for ordering the ANA test is as an aid to the diagnosis of a range of connective tissue diseases (CTDS) including Systemic Lupus Erythematosus (SLE), Sjogren's syndrome and Systemic Sclerosis (SS). Anti-nuclear antibodies, particularly at low titres may also be seen following infection, with certain drug therapies and in a number of other autoimmune/inflammatory conditions, and are found frequently in the normal, especially elderly, population.
 
Indirect immunofluorescence (IIF) is performed on fixed HEp2 cells. the titre of antibody and the pattern of staining is reported. This cell line has large nuclei which allows better definition of the staining pattern and there are also significant numbers of dividing cells allowing detection of autoantibodies to cell cycle specific antigens such as centromere proteins.
Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Intrinsic Factor Antibody

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
14 Days
 
What happens if the result is positive or abnormal

General additional information

​Diagnosis of pernicious anaemia (positive in ~70% of patients with pernicious anaemia).

Pernicious anaemia is a chronic disease at the end stage of type A (autoimmune) chronic atrophic gastritis. Type A is autoimmune in nature and associated with pernicious anaemia. Type B (non-autoimmune) is associated with H.pylori infection. During the progression of type A chronic atrophic gastritis, gastric parietal cells which produce intrinsic factor and HCl, and zymogenic cells which produce pepsinogen, are destroyed and production of Intrinsic Factor (IF) and HCl is eliminated. Intrinsic Factor is essential for the absorption of vitamin B12 from the intestine and its absence leads to vitamin B12 deficiency and megaloblastic anaemia. Diagnosis of pernicious anaemia is important for the treatment of the anaemia itself and prevention of irreversible neurological damage. Circulating antibodies to Intrinsic Factor are highly specific and can be detected in >50% of cases with pernicious anaemia. These antibodies are of 2 types: Type 1, blocking antibodies which prevent the binding of vitamin B12 to the IF molecule and Type 2 antibodies which may interfere with the binding of the IF-vitamin B12 complex to the ileal receptor.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Rheumatoid Factor

How to request

​Trak, ICE, Clinical Immunology request form.

This test can only be requested by specified Rheumatology Consultants.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround

21 Days

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist

General additional information

​Diagnosis of seropositive rheumatoid arthritis, differential diagnosis of rheumatic disease.

High levels of RF may be seen in Rheumatoid Arthritis, Subacute Bacterial Endocarditis (SBE), Sjogrens syndrome, and other infections and autoimmune/inflammatory conditions. RF is of no use in monitoring disease activity in RA where C-Reactive protein levels should be used.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Cyclic Citrullinated Peptide

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
7 Days
 
 

What happens if the result is positive or abnormal

General additional information

​Diagnosis of seropositive rheumatoid arthritis, differential diagnosis of rheumatic disease.

Anti-CCP antibodies are more specific than Rheumatoid Factor for diagnosing Rheumatoid Arthritis (RA) and are present in approximately 70% of early stage RA patients. They are good predictors of radiographic joint disease and may be useful in discriminating between erosive osteoarthritis and RA. These antibodies may be present up to 10 years prior to diagnosis and so are highly predictive of the future development of RA in both healthy subjects and patients with undifferentiated arthritis.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Extractable Nuclear Antigen

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

​Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
21 Days
 
What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
Assays to determine ENA specificities in the evaluation of any patient suspected of having a systemic connective tissue disease.
 
Samples for Anti-ENA are initially screened using a Fluorescence Enzyme Immunoassay (FEIA) containing all seven antigens. Positive samples are further investigated to identify the individual specificities. the clinical interpretation depends on the ENA specificities that are detected.
 
Antibodies to Sm and RNP Antigens
 
Antibody to Sm antigen is found in a minority of patients with SLE for which it is a very specific marker. the presence of antibody to RNP is found in patients with a variety of systemic connective tissue diseases, including SLE, discoid LE, RA and SS and mixed connective tissue disease.
 
Antibodies to Ro (SS-A) and La (SS-B) Antigens
 
Anti-Ro antibody is associated with Primary Sjogrens syndrome and less commonly with SLE. There seems to be close association between the presence of this antibody system and photosensitivity. Two forms of Ro are found, known as Ro60 and Ro52 and antibodies to both may be clinically significant. Both specificities are detected in the assay used. In women of child bearing age Ro antibody is associated with risk of congenital heart block and neonatal lupus.
 
Antibodies to Scl-70 Antigens
 
Anti-Scl-70 identifies DNA Topoisomerase-1 and is one of several antibodies which give rise to nucleolar staining. This antibody is associated with the more diffuse form of scleroderma/systemic sclerosis, and with impaired pulmonary diffusion.
 
Antibodies to Jo-1 Antigens
 
Anti-Jo-1 is the most common of a group of myositis-specific antibodies (MSAs) which includes Anti-PL12, Anti-OJ, Anti-Mi-2 and Anti-SRP. These antibodies target aminoacyl-tRNA synthetases (histidyl-in the case of Jo-1). Jo-1 occurs rarely in polymyositis and dermatomyositis, and when present is associated with an increased risk of interstitial lung disease.
 
Antibodies to Centromere Antigens
 
Anti-centromere antibodies (ACAs; often styled solid, anticentromere) are autoantibodies specific to centromere and kinetochore function. They occur in some autoimmune diseases, frequently in limited systemic scleroderma (formerly called CREST syndrome), and occasionally in the diffuse form of scleroderma. They are rare in other rheumatic conditions and in healthy persons.
 
 
 
 
Volume - Child 1

4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Insulinoma Antigen-2 Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Diabetic tests can only be requested via Hospital referrals.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
21 Days
 
 
General additional information

Islet antigen-2(IA-2),pre Islet antigen (IA-2), previously known also as ICA-512, is a major target of islet cell autoantibodies. Autoantibodies to IA-2 are present in up to 80% of children and adolescents at diagnosis of type 1 diabetes. Testing for IA-2A complements GAD measurement, since more than 90% of children have antibodies to at least one of these proteins at diabetes onset. IA-2 generally develops later in the process leading to type 1 diabetes and is therefore associated with more rapid progression. These antibodies do not persist as long following diagnosis as GAD and are less common in patients who are diagnosed with type 1 diabetes over the age of 30 years. They are therefore less useful than GAD for characterising diabetes in longer term older patients.

Tested alongside Anti-GAD and Anti-ZnT8.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Glutamic Acid Decarboxylase Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Diabetic screen tests can only be requested via Hospital referrals.

Availability

​Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
21 Days
 
 
What happens if the result is positive or abnormal

General additional information

​Diagnosis of Type 1 Diabetes Mellitus.

Tested alongside Anti-IA2 and Anti-ZnT8

Two forms of GAD, known as GAD65 and GAD67, are recognised. The current assay recognises antibodies to GAD65 which are found in T1DM and approximately 60% of patients with stiff-person syndrome.

 

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9ml

Additive - Adult 1

​Clotting activator/gel

Thyroid Peroxidase Antibodies

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon to Fri

Anticipated turnaround
14 Days
 
 
What happens if the result is positive or abnormal

General additional information

Circulating thyroid autoantibodies have been widely implicated in the aetiology of autoimmune thyroid diseases.  Autoantibodies to various thyroid antigens have been detected in a range of thyroid dysfunctions including chronic thyroiditis, nontoxic goitre, Hashimoto’s thyroiditis and Graves disease. 

Approximately 2% of the population of Europe and North America are affected with autoimmune thyroid disease. Autoimmune thyroid diseases are 5 to 10 times more common in women than men.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

dsDNA

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
2 weeks (10 working days)
 
These TaTs are currently under review and may change.
What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information

​An Anti-dsDNA test is often useful diagnostically for patients who have antinuclear antibodies or clinical findings suggestive of SLE. the presence of Anti-dsDNA is one of the American Rheumatism Association criteria for SLE and the antibody is rarely found in high levels in patients with other connective tissue diseases. However Anti-dsDNA antibodies may also be seen in patients with overlap symptoms between SLE and other autoimmune diseases, as well as in autoimmune liver disease.

Container_Child1
Volume - Child 1

​Minimum 1ml

Additive - Child 1

​None

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Gel

Glomerular Basement Membrane Antibody

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours 9am-5pm Mon-Fri.

Anticipated turnaround
Urgent same day/next day service available. Sample must be received in the lab by 1pm Mon and Fri. Prior notice must be given before a sample is sent.
 
Non urgent samples 7 Days.
What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

Any urgent results are telephoned directly to the requesting clinician.

If 'new' positive the result is given to the Consultant Immunologist or Registrar

 

General additional information

​Diagnosis of Goodpasture's Syndrome

Anti-GBM antibodies are found in the sera of the majority (>90%) of patients with Goodpasture's syndrome. The diagnosis must be confirmed by renal biopsy. They are also occasionally found in ANCA-associated disease, usually with MPO-ANCA but very rarely with PR3-ANCA.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Neutrophil Cytoplasmic Antibody

Special instructions for collection

Serum samples only please.

How to request

​By prior arrangement, email the Immunology lab on ImmunologyLabs@nhslothian.scot.nhs.uk

Availability

Normal working hours 9am-5pm Mon-Fri. For urgent requests please see Anti-PR3 and Anti-MPO.

Anticipated turnaround

21 Days

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

General additional information
ANCA's are measured by IIF. 
 
Positive ANCA with MPO or PR3 specificity is strongly suggestive of ANCA associated vasculitis. Clinical correlation is advised along with confirmation of diagnosis histologically (tissue biopsy) wherever possible. Depending on the clinical scenario, urgent treatment may be warranted (by way of immune suppression therapy/therapeutic plasmapheresis).
 
Negative ANCA does not exclude vasculitis, and if there is clinical concern about vasculitis a tissue biopsy for histological diagnosis remains the gold standard.
Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Myeloperoxidase Antibody

Special instructions for collection

Serum samples only please.

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours are 9am-5pm Mon-Fri.

Anticipated turnaround
Urgent same day/next day service available. Sample must be received in the laboratory by 1pm Mon-Fri. Prior to sending a sample the lab must be contacted.
 
Non urgent samples 7 Days.

What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist.

Any urgent results are telephoned directly to the requesting clinician.

 If 'new' positive, the result is given to the Consultant Immunologist or Registrar to contact the requesting clinician.

General additional information

​This test is performed in conjunction with Anti-PR3.

Positive MPO specificity is strongly suggestive of ANCA associated vasculitis. Clinical correlation is advised along with confirmation of diagnosis histologically (tissue biopsy) wherever possible. Depending on the clinical scenario, urgent treatment may be warranted (by way of immune suppression therapy/therapeutic plasmapheresis).

Negative ANCA does not exclude vasculitis, and if there is clinical concern about vasculitis a tissue biopsy for histological diagnosis remains the gold standard for diagnosis.

 

Volume - Child 1

4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

​4.9mls

Additive - Adult 1

​Clotting activator/gel

Anti-Proteinase 3 Antibody

How to request

​Trak, ICE, Clinical Immunology request form.

Availability

Normal working hours ​9am - 5pm Mon-Fri

Anticipated turnaround
Urgent same day/next day service available. sample must be received in lab by 1pm Mon-Fri. Prior to sending a sample the lab must be contacted.
 
Non urgent samples 7 Days.
 
What happens if the result is positive or abnormal

Reviewed and authorised by Consultant Immunologist. 

Any urgent results are telephoned directly to the requesting clinician.

If 'new' positive, the result is given to the Consultant Immunologist or Registrar to contact the requesting clinician.

General additional information

​This test is performed in conjuction with Anti-MPO

Positive PR3 specificity is strongly suggestive of ANCA associated vasculitis. Clinical correlation is advised along with confirmation of diagnosis histologically (tissue biopsy) wherever possible. Depending on the clinical scenario, urgent treatment may be warranted (by way of immune suppression therapy/therapeutic plasmapheresis)

Negative ANCA does not exclude vasculitis, and if there is clinical concern about vasculitis a tissue biopsy for histological diagnosis remains the gold standard for diagnosis.

Volume - Child 1

​4.9ml

Additive - Child 1

​Clotting activator/gel

Volume - Adult 1

4.9ml

Additive - Adult 1

​Clotting activator/gel

HIV RNA Quantitative PCR

Transport arrangements

​Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards/ departments), Hospital Pneumatics Tube System (PTS).

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

​Weekdays 08.30-17.00

Anticipated turnaround

7 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Samples tested twice per week on a Monday and Thursday.

Testing will not be performed with out a completed form- Combined HIV Immunological and Viral Load Request Form.pdf

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

​9ml blood

Parechovirus PCR

Transport arrangements

​Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards/ departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

​Weekdays 08.30-17.00

Weekend 08:30 - 16:00

Anticipated turnaround

​4 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

​Grape sized amount of faeces taken into Sterile Stool Container

Volume - Child 2

​CSF taken into Sterile Universal Container

Volume - Child 3

Throat swab

Volume - Adult 1

​Grape sized amount of faeces taken into Universal Stool Container

Volume - Adult 2

​CSF taken into Sterile Universal Container

Volume - Adult 3

Throat swab

Legionella Urinary Antigen Testing

Transport arrangements

Useful: in adult patients hospitalised with severe pneumonia, where preferred sputum or BAL samples are unavailable.

Transport as soon as is practicable. (within 24 hours).

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

 

Special instructions for collection

A sputum or BAL sample for the respiratory pathogen PCR panel (which includes Legionella) is the preferred sample for diagnosis as it includes several differential diagnoses. However, sputum or BAL may not always be available, and therefore urinary antigen testing may be appropriate. Do not send in boric acid containers; they cannot be processed. Specimens will only be tested for Legionella urinary antigen if the patient meets at least one of the following criteria:
• Intensive Care patient
• Immuno-compromised/suppressed patient
• CURB65 score ≥3
• Recent foreign travel
• Spa exposure

How to request

Via Trak ("Legionella Urinary Ag Profile") or by request form, or GP comms.

Availability

0900-1700 (RIE + SJH)

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Static information/disclaimer

​Suitable for detection of Legionella pneumophila serogroup 1 antigen only

General additional information

​Clinical indication for test:

Adult patient hospitalised with severe pneumonia in NHS Lothian.


A sputum or BAL sample for the respiratory pathogen PCR panel (which includes Legionella) is the preferred sample for diagnosis as it includes several differential diagnoses. However, sputum or BAL may not always be available, and therefore urinary antigen testing may be appropriate.

Specimens will only be tested for Legionella urinary antigen if the patient meets at least one of the following criteria:
• Intensive Care patient
• Immuno-compromised/suppressed patient
• CURB65 score ≥3
• Recent foreign travel
• Spa exposure

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Adult 1

Ur​ine taken into Sterile Universal Container

Protein S Gene Screen for Detection of Familial Mutation (PROS1)

Transport arrangements

​Lab van or 1st class post

Sample storage arrangements

​Refrigerate - DO NOT FREEZE

Availability

​Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

​Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

Full Genetic Screening of the Protein S Gene (PROS1)

Transport arrangements

​Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

​Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

​Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

 

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

Helicobacter pylori antigen (faeces)

Transport arrangements

Useful in:

  • patients with uncomplicated dyspepsia unresponsive to lifestyle change and antacids, following a single one month course of proton pump inhibitor (PPI), without alarm symptoms.
  • patients with a history of gastric or duodenal ulcer/bleed who have not previously been tested.
  • Patients before taking NSAIDs, if they have a prior history of gastro-duodenal ulcers/bleeds. (See Test and treat for Helicobacter pylori (HP) in dyspepsia PHE Guidance)

Transport as soon as is practicable.

 

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Sample must be received in the laboratory within 48 hours of collection- so preferably don't collect on a Friday. Do not overfill the container. 

How to request

GP comms, or via Trak ("Helicobater antigen profile (All sites))" or by request form.

Availability

 

0900-1700 (SJH) Monday - Friday. Samples batched and run 3 times per week.

 

Anticipated turnaround

Up to 6 days

General additional information

The patient should not have had any antibiotics in the previous 4 weeks, or proton pump inhibitors in the previous 2 weeks, to avoid false negatives. Do not routinely offer re-testing after eradication

Resources

PHE Guidance

Refhelp Guidance

Lothian Joint Formulary

 

Volume - Child 1

1-5ml

Volume - Adult 1

1-5 ml

Alport syndrome gene sequencing (COL4A3, COL4A4, COL4A5)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

​Refrigerate - DO NOT FREEZE

Anticipated turnaround

​8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician​

General additional information

 

An information sheet for this test is available.​

Container_Adult1
Volume - Adult 1

3ml

Porphyrin - Erythrocyte

Special instructions for collection

Protect sample from light by covering with aluminium foil

Anticipated turnaround

​28 days

General additional information

Samples from RIE, SJH and RHCYP will be sent via WGH.

Clinical testing strategy can be found here:

 

 

Further information for referring labs can be found here.

 

Container_Adult1
Container_Child1
Volume - Child 1

​1.0 mL

Volume - Adult 1

1.0 mL

Urinary Cannabinoid

Anticipated turnaround

7 days

General additional information

Reported as positive or negative. Cannabinoid (cannabis) is no longer part of the drugs-of-abuse test profile and should be requested separately. This can be done on the same sample as drugs of abuse.

Container_Adult1
Volume - Adult 1

5 mls

Sirolimus

Special instructions for collection

​Collect sample just before next dose.

Availability

Samples analysed in batches twice per day Mon – Fri.

Samples received before 10am will normally be reported by 2pm.

Samples received before 2pm will normally be reported same day.

 

Samples analysed on a Sat morning by prior arrangement only with the Duty Biochemist and must be received by 10am.

Anticipated turnaround

​3 days

General additional information

Therapeutic range varies with time post-transplant.

Container_Adult1
Container_Child1
Volume - Child 1

​0.5 ml

Volume - Adult 1

1.0 ml

AST:ALT Ratio

Anticipated turnaround

1 day

General additional information

​Indicated for the work-up of asymptomatic abnormal LFTs. >1.0 Abnormal AST:ALT Ratio; may indicate fibrosis / cirrhosis. Consider GI referral.

This test is not valid if increased AST is from non-hepatic source such as muscle or red cells.

Container_Adult1
Volume - Adult 1

0.2 ml

Transfusion Reaction Investigation

Transport arrangements
​Samples MUST be received IMMEDIATELY after collection
Sample storage arrangements
Store at 4oC​
Special instructions for collection
​Venesection of the sample must be AWAY from the site of blood infusion.
 

NHS Lothian operates a Zero Tolerance approach in relation to blood sample acceptance criteria. Errors in patient identification and sample labelling may lead to ABO-incompatible transfusions.

The demographics on the samples MUST be hand written, legible and MUST match exactly to the accompanying request form. Samples labelled with an addressograph or where evidence of an addressograph have been attached will be discarded. Samples with errors or where patient core identifiers have been obliterated will be discarded.

Sample Labelling

The following patient identifying data and sampler signature is mandatory -

  • CHI number (or Hospital Number where no CHI number is available - See CHI exceptions)*
  • Surname
  • Forename
  • Date of Birth
  • Signature

Sample Labelling for Unknown Patients

  • Surname / Forename = UNKNOWN
  • Temporary Identification Number = beginning with 700
  • Gender
  • Sample dated and signed

Once patients details become known, a new sample must be sent to the laboratory

Request Form Labelling

Addressograph labels are acceptable for request forms. If the form is handwritten then the information must be clear, legible and MUST contain the following data identifiers -

  • Surname
  • Forename
  • Date of Birth
  • CHI Number (See CHI exceptions)*
  • Name and signature of the person taking the sample
  • Name of the requesting clinician. (For component requests, this is the Doctor or authorised Nurse that has prescribed the transfusion)
  • Clinical details are desirable but are not essential

*CHI Exceptions

Not all patients will have a CHI number. If the patient is a genuine CHI exception then the Hospital number is acceptable and MUST be used. A CHI number may not be available in the following circumstances -

  • Foreign visitors
  • Patients from England, Wales and Ireland
  • Patients not registered with a GP in Scotland
  • Patients currently remanded within Her Majesty's Prisons
  • Patients in the armed forces
  • Newborn infants <3 days old.

A MINIMUM of 2.0ml of blood is required for adult specimens.

How to request

​If a transfusion reaction is suspected then stop the transfusion immediately and contact the Blood Transfusion Laboratory for advice. The Biomedical Scientist will instruct on how to proceed. All suspected transfusion reactions must be discussed with the Haematology Registrar (contact via switchboard). The registrar will decide whether a full Transfusion Reaction Investigation is warranted.

All Transfusion Reaction Investigation requests must be made via request form

  • Obtained from the Blood Transfusion Laboratory (WGH / SJH)
Availability
​No restrictions: A Transfusion Reaction Investigation will be carried out at any time, where deemed appropriate by the Haematology Registrar.
Anticipated turnaround
​Dependant on complexity of the investigation.
What happens if the result is positive or abnormal
​If the Transfusion Reaction Investigation is 'Positive', the Haematology Registrar will be informed, who will then contact the referring doctor and discuss how best to proceed. Please provide a telephone / bleep number.
Container_Adult1
Container_Child1
Volume - Child 1

​4.5ml

Additive - Child 1

​EDTA

Volume - Adult 1

​4.5ml

Additive - Adult 1

​EDTA

Mycoplasma pneumoniae PCR

Transport arrangements

​Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards/ departments), Hospital Pneumatic Tube System (PTS).

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

​Weekdays 08.30 - 17.00

Weekends 09.00 - 16.00

Anticipated turnaround

​7 days

What happens if the result is positive or abnormal

The duty microbiologist will contact the clinical team to discuss the result and any infection control related issues where appropriate.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

​Throat Swab

Volume - Child 2

B​ronchoalveolar lavage taken into Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into Sterile Conical Centrifuge Tube

Volume - Adult 1

​Throat swab

Volume - Adult 2

​Bronchoalveolar lavage taken into Sterile Universal Container

Volume - Adult 3

​Induced sputum taken into Sterile Universal Container

Air Sampling

Transport arrangements

Air Sampling is for infection control purposes. Please see Air Sampling SOP on Infection Control intranet site. (SOP on infection control website - need sent on specific form at back of SOP from theatre) 

Special instructions for collection

Please arrange through the Infection Control Team. Agar plates need sealed all the way round and to be in date. 

How to request

Please contact the Infection Control Team.

Container_Adult1

Vomit - Routine C & S

Transport arrangements

There is no clinical utility in sending vomitus for bacterial culture and sensitivities. Please consider whether virological testing for Norovirus etc. would be useful instead.

Special instructions for collection

Not suitable for general bacteriological investigation. 

Availability

Not processed by bacteriology.

General additional information

Not processed by bacteriology. Do not send.

Carbapenemase-producing Enterobacteriaceae (CPE or CRE) screening

Transport arrangements

Useful: In patients identified as being at higher risk for CPE colonisation as per HPS clinical risk assessment (inpatient outside of Scotland in last 12 months, patients who have received holiday dialysis outside Scotland in the last 12 months, or patients who have been close contact with someone colonised or infected with CPE in the last 12 months)

Transport as soon as is practicable.

Sample storage arrangements

Store at 4-6oC

Special instructions for collection
A rectal swab should be taken using a routine bacteriology swab by inserting the swab into the rectum and rotating it gently, making sure faecal material is visible on the swab. The swab should then be put back into the transport medium container and sent to the microbiology laboratory for testing.
 
If it is not possible to take a rectal swab, a stool sample can be collected instead. The stool sample should be collected in the same way as for routine culture.
 
Patients with wounds or lesions should also have these swabbed and patients with a urinary catheter should have a catheter specimen of urine sent for testing.  Rectal swabs are not suitable sample types for children and babies - please submit a stool specimen.
 
Routine culture of swabs and stool may miss these organisms - please take separate samples and send specifically for CPE screen.
How to request

Via Trak ("CPE Scren RIE/WGH/RHSC") or via request form, or GP comms, stating clearly for CPE screen.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Electronically available.

General additional information

Patients who are identified as high risk should be managed as if CPE positive and should be isolated in a single room, preferably with en-suite facilities, until the result of the test is known. It is essential to consistently apply SICPs and contact TBPs as set out in the National Infection Prevention and Control Manual. 

Container_Adult1
Volume - Child 1

​2-3mls

Volume - Adult 2

​2-3mls

Femoral Head - Routine C & S

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at 4-6oC

Special instructions for collection

Place in appropriate sterile container WITHOUT ADDITIVE

How to request

Via TRAK or yellow request form

Availability

RIE : 9 am to 8 pm daily. SJH : Mon - Friday 9am - 5pm. Sat - Sun 9 am - 12 nn

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Telephoned by Microbiologist

Container_Child1
Additive - Adult 1

NONE

Heart Valves (native or artificial) - Routine M, C & S

Transport arrangements

Useful: In patients with suspected bacterial or fungal native or prosthetic valve endocarditis.

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Do not add preservative. Any sterile container is an acceptable alternative to a Universal

How to request

Via Trak (C&S - Tissue) or request form.

Availability

0900-2000 (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Valve tissue can be sent to Great Ormond Street for bacterial 16s RNA PCR and/or fungal 18s RNA PCR. Please discuss with Microbiology medical staff.

Additive - Child 1

NONE

Additive - Adult 1

NONE

Semen for Routine C & S

Transport arrangements

Useful: In specific patients suspected of having chronic bacterial prostatitis. Urine for M, C, S may be of more utility in acute prostatitis.

Transport as soon as is practicable

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Single total ejaculate required.

How to request

GP order comms or via Trak ("C&S - Fluids" then specify specimen type "Semen")

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Volume - Adult 1

0.5 to 10 ml

Oesophageal Brushings - Mycology

Transport arrangements

As soon as practicable

Sample storage arrangements

Store at 4-6oC

How to request

Via TRAK or yellow request form

Availability

Mon-Fri 9am to 5pm.

Anticipated turnaround

20 days

What happens if the result is positive or abnormal

Telephoned by Microbiologist

Hypertrophic Cardiomyopathy (extended panel)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

10 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Volume - Adult 1

3ml

Dilated cardiomyopathy (Titin gene sequencing)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

General additional information

An information sheet for this test is available.

Container_Adult1
Volume - Adult 1

3ml

Stargardt disease (ABCA4 gene sequencing)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Volume - Adult 1

3ml

RAS / MAPK pathway developmental syndromes

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

General additional information

An information sheet for this test is available.

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Spinal Muscular Atrophy

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

General additional information

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Ornithine Transcarbamylase Deficiency (OTC)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Myotonic Dystrophy

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Hypertrophic / Dilated Cardiomyopathy

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Volume - Adult 1

3ml

Hereditary Non-Polyposis Colorectal Cancer / Lynch Syndrome

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Volume - Adult 1

3ml

Hereditary Haemorrhagic Telangiectasia

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Volume - Adult 1

3ml

Fragile X Syndrome

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Dentatorubral-pallidolusian atrophy (DRPLA)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Volume - Adult 1

3ml

Cystic Fibrosis

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Achondroplasia / Hypochondroplasia

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

22q11 del Velocardiofacial / Di George Syndrome

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Result Authorised

Container_Adult1
Container_Child1
Volume - Child 1

​1ml

Volume - Adult 1

3ml

Cervical screening sample

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Do not leave brush in sample container
How to request
Enter request online using the Scottish Cervical Call Recall System (SCCRS). Paper request forms will only be accepted in exceptional circumstances
Availability
9am-5pm
Anticipated turnaround
≤ 35 days
General additional information
Request ThinPrep PAP test vial and cervical brushes from 27009 (0131 242 7009). For SCCRS assistance contact ATOS on 0845 9572600 or email smc.nhsis@atosorigin.com, do not contact the screening laboratory.
Container_Adult1

Cystoscopic/catheter urine

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals. History of catheterisation and cystoscopy must be noted on request form
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Voided urine

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals. Collect mid morning on 3 consecutive mornings. Do not send early morning samples. History of catheterisation must be noted on request form
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Thyroid fine needle aspirate

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
2 fixed and 2 air dried slides required. Please label slides with patient’s first name, surname and CHI number. Place labelled air dried and fixed slides in separate transport containers clearly marked air dried and fixed respectively. Rinse needle in PreservCyt container and clearly mark sample site on the container.
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request glass slides (frosted ends) and transport boxes from NDC via top-up service/shopping list. Can also be ordered on PECOS. Request PreservCyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1
Container_Adult2

Sputum

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Not recommended for the diagnosis of malignancy unless the patient is unfit for other investigations. Samples will not be routinely accepted without prior discussion. Samples for diagnosis of TB should be sent to Microbiology
How to request
Complete Pathology request form
Availability
9am-5pm
Container_Adult1

Seminal fluid

Transport arrangements
Royal Mail
Sample storage arrangements
As advised by Chalmers Sexual Health Clinic
Special instructions for collection
As advised by Chalmers Sexual Health Clinic
How to request
As advised by Chalmers Sexual Health Clinic
Availability
9am-5pm
Container_Adult1

Pleural fluid for Pathology

Transport arrangements

If outwith the RIE please send via the laboratory van service

Sample storage arrangements

3-8°;C

Special instructions for collection

Do not send in CytoLyt and do not send in drain container. No more than 2 universals required.

How to request

Complete Pathology request form

Availability

9am-5pm

General additional information

Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS

Container_Adult1

Pericardial fluid

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Peritoneal washings

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Pancreatic fine needle aspirate

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Mark sample site on each container
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt from Cytology laboratory 27162 (0131 242 7162)
Container_Adult1

Oesophageal brushing

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Do not send sample brush in empty container. Always place brush in CytoLyt or saline. Mark sample site on each container.
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1

Neck fine needle aspirate

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Rinse needle in either PreservCyt or CytoLyt and mark sample site on each container.
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt and PreservCyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1
Container_Adult2

Fine needle aspirates

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Rinse needle in either PreservCyt or CytoLyt and mark sample site on each container.
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt and PreservCyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1
Container_Adult2

Joint fluid

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Endoscopic ultrasound fine needle aspirate

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Mark sample site on each container
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1

Endobronchial ultrasound fine needle aspirate

Transport arrangements

If outwith the RIE please send via the laboratory van service

Special instructions for collection

Mark sample site on each container. Ensure sample container is clearly marked if it contains formalin with the appropriate labels

How to request

Complete Pathology request form

Availability

9am-5pm

Anticipated turnaround

​Report within 5 working days. Turnaround times will increase where there is a need to perform further investigations

What happens if the result is positive or abnormal

​Results are reported on APEX and available on APEX and Track.

Container_Adult1

Cyst fluid

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals. Mark sample site on container
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

CSF (Cytology)

Transport arrangements

If outwith the RIE please send via the laboratory van service

Sample storage arrangements

3-8°;C

Special instructions for collection

Send to RIE laboratory immediately after sample collection

How to request

Complete Pathology request form

Availability

9am-5pm

General additional information

Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS

Container_Adult1

Bronchial washings or aspirate

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Mark sample site on each container. Samples for diagnosis of TB should be sent to Microbiology
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1

Bronchial brushings

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Mark sample site on each container. Do not leave brush in sample container
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1

Breast fine needle aspirate

Transport arrangements
If outwith the WGH please send via the laboratory van service.
Special instructions for collection
2 fixed and 2 air dried slides required. Please label slides with patient’s first name, surname and CHI number. Place labelled air dried and fixed slides in separate transport containers clearly marked air dried and fixed respectively.
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request glass slides (frosted ends) and transport boxes from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Biliary brushings

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Do not send sample brush in empty container. Always place brush in CytoLyt or saline
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request CytoLyt from the Cytology laboratory 27162 (0131 242 7162)
Container_Adult1

Bile

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send more than 2 universals
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Ascitic fluids

Transport arrangements
If outwith the RIE please send via the laboratory van service
Sample storage arrangements
3-8°;C
Special instructions for collection
Do not send in drain container. No more than 2 universals required
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request universals from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Anal Smear

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
Do not leave brush in sample container
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request ThinPrep PAP test vial and collection brush from 27009 (0131 242 7009)
Container_Adult1

Abdominal fat pad

Transport arrangements
If outwith the RIE please send via the laboratory van service
Special instructions for collection
2 fixed slides required. Please label slides with patient’s first name, surname and CHI number. Place labelled slides in a clearly labelled transport container.
How to request
Complete Pathology request form
Availability
9am-5pm
General additional information
Request glass slides (frosted ends) and transport boxes from NDC via top-up service/shopping list. Can also be ordered on PECOS
Container_Adult1

Nerve biopsy

Transport arrangements
​send without delay only to WGH Pathology (not RIE)
Container_Adult1
Additive - Adult 1
None - must be fresh. Lay on card, must be arranged in advance by phoning WGH Pathology 0131 537 1963 and deliver immediately by porter or theatre orderly to inform lab sample is on the way

Muscle biopsy

Transport arrangements
Sent without delay - only to WGH Pathology (not RIE).
Container_Adult1
Additive - Adult 1
Must be arranged in advance by phoning WGH Pathology 0131 537 1963 (31963).

Rectal biopsy for Hirschprung's

Transport arrangements

Samples should be sent direct to Pathology dept at RIE

Sample storage arrangements

Specimen should be sent fresh and within lab hours

Special instructions for collection

Place form in separate poly compartment

How to request

Must be arranged in advance by phoning 0131 242 7169 (27169). Complete Pathology form and send with sample to lab.

What happens if the result is positive or abnormal

Not applicable

Container_Child1
Additive - Child 1

Gauze moistened with buffered saline - must be sent fresh

Lower GI Surgical Specimens large e.g. large bowel, colonectomy

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 31963
Additive - Adult 1
4% Buffered formaldehyde

Breast Resection

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 31963
Additive - Adult 1
4% Buffered formaldehyde

Spleen

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots cam be requested by calling lab reception Ext 31963
Additive - Adult 1
4% Buffered formaldehyde

Placenta

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Specimen should be sent fresh and within lab hours
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots cam be requested by calling lab reception Ext 27164
Additive - Adult 1
None - specimen should be sent fresh

Pancreatic resection

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27164
Additive - Adult 1
4% Buffered formaldehyde

Skin -Wide resection

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 31963
Additive - Adult 1
4% Buffered formaldehyde

Limbs/partial or amputation

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27164
Additive - Adult 1
4% Buffered formaldehyde

Laryngectomy/neck dissection, mandible and maxilla

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots cam be requested by calling lab reception Ext 27164
Additive - Adult 1
4% Buffered formaldehyde

Kidney Specimen - malignant

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 31963
Additive - Adult 1
4% Buffered formaldehyde

Kidney Specimen - non malignant

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27169
Additive - Adult 1
4% Buffered formaldehyde

Liver Resection Specimen

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27168
Additive - Adult 1
4% Buffered formaldehyde

Gynae Surgical Specimens large e.g. Hysterectomy

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27167
Additive - Adult 1
4% Buffered formaldehyde

Upper GI Surgical Specimens large e.g. Stomach, oesophageal resections, small bowel

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27166
Additive - Adult 1
4% Buffered formaldehyde

Respiratory Surgical Specimens Lung lobes

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Specimen should be sent fresh and within lab hours
Special instructions for collection
Place form in separate poly compartment
How to request
Call lab reception on Ext 27164 to inform them .Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27165
Additive - Adult 1
None - specimen should be sent fresh

Respiratory Surgical Specimens large (Except Lobes)

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Ensure specimen is completely covered by formaldehyde
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
General additional information
Pots can be requested by calling lab reception Ext 27164
Additive - Adult 1
4% Buffered formaldehyde

Skin IF sample

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Container_Adult1
Container_Adult2
Additive - Adult 1
Filter paper moistened with buffered saline

Renal Biopsy for IF and EM

Transport arrangements

If from Ultrasound RIE take the box along to Main X-Ray Reception and call lab 27167 to collect specimen.

If from any other site call ab (27167) for instruction

Sample storage arrangements
Place one core in each pot
Special instructions for collection
Contact lab on morning of procedure to book specimen (ext 27167), then again when specimen ready.
How to request
Complete Pathology form, place one core in each of the 2 pots in Blue box and take to main X-Ray reception a.s.a.p after biopsy
What happens if the result is positive or abnormal
Not applicable
General additional information
Blue boxes can be requested in advance for lab Ext 27167
Additive - Adult 1
a) 4% buffered formaldehyde b) pbs damp paper

Femoral head

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Gynae Surgical specimens Small e.g Ectopic, Fallopian tubes, POCs (except for cytogenetics

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Breast Lymph nodes

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Lymph Nodes ? Lymphoma

Transport arrangements
Samples should only be sent (fresh) direct to Pathology dept at WGH
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Note - Should be sent fresh unfixed, without delay. Telephone laboratory before sending - 0131 537 1963 (31963).

Mediastinal Lymph nodes

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Neuropath biopsy (very small) e.g temporal artery

Transport arrangements

Samples should be sent direct to Pathology dept at RIE

Sample storage arrangements

Place fresh sample into formalin as soon as possible

Special instructions for collection

Place form in separate poly compartment

How to request

Complete Pathology form and send with sample to lab

What happens if the result is positive or abnormal

Not applicable

Additive - Adult 1

Pre-filled with 4% buffered formaldehyde

Vas Deferens biopsy

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Synovium, bursa, ganglion

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Savilary gland

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Parathyroid biopsies

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Pleural biopsy

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Needle core biopsies

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Penile biopsy, Foreskin, testicular biopsy

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Haemorrhoids

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

ENT specimens (v small)

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Skin biopsy

Transport arrangements
Samples should be sent direct to Pathology dept at WGH
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4% buffered formaldehyde

Dental biopsies e.g. buccal mucosa, tongue biopsy

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Bronchoscopy specimens

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Bone Marrow Trephines

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Bladder Biopsy, bladder tumour chippings

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Polyps

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Artery, heart valves

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Ampullary biopsy

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Gynae specimens e.g. LETZ, Cervical Biopsies, endometrial samples

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Prostate cores

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Breast cores

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Endoscopic biopsies

Transport arrangements
Samples should be sent direct to Pathology dept at RIE
Sample storage arrangements
Place fresh sample into formalin as soon as possible
Special instructions for collection
Place form in separate poly compartment
How to request
Complete Pathology form and send with sample to lab
Availability
lab hours 8:30-17:00 Monday to Friday
What happens if the result is positive or abnormal
Not applicable
Additive - Adult 1
Pre-filled with 4%buffered formaldehyde

Referred tests not listed

Transport arrangements

​Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards/ departments), Hospital Pneumatic Tube System (PTS).

Sample storage arrangements

​Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

​Variable

What happens if the result is positive or abnormal

​Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please call Duty Virologist to discuss 0131-242-6086

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Varicella Zoster Virus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

1-2ml blood​

Volume - Child 2

​Swab from affected site

Volume - Adult 1

2.7 ml

Volume - Adult 2

Swab from affected site

Varicella Zoster Virus IgG

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Syphilis PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Bacteriologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Adult 1

Swab from affected site

Toxoplasma IgG Serology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Result Authorised and sample sent to reference laboratory.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Syphilis confirmation

Transport arrangements

Samples should be appropriately packaged in accordance with current regulations and sent to Microbiology, Royal Infirmary of Edinburgh via hospital porter collection, hospital pneumatic tube system, inter-site van service, GP van service, external hospital van service, courier or Royal Mail.

How to request
Sample type
• Blood (clotted blood, K EDTA blood, LiHep blood, not cord blood) 1.5 ml
• CSF (clean container) 0.5 ml
 
Request information
• unique identifier (forename and surname/CHI number/NaSH number)
• date of birth and gender
• sample type
• location of sender
• sender’s lab number (if applicable)
• any relevant clinical details
Availability

Weekdays 09.00 - 17.00

 

Anticipated turnaround

7 days

What happens if the result is positive or abnormal

Clinically significant results will be communicated by phone/e-mail to the requestor.

General additional information

​Syphilis/treponemal serology confirmation testing will include some or all of the following tests: treponemal IgM, TPHA (Treponema pallidum haemagglutination agglutination assay) and RPR (rapid plasma reagin). They are used for:

• confirming reactive treponemal screening assay results
• investigation of possible neonatal infections
• investigation and follow-up of neurosyphilis
 
Results should be available electronically. For senders outwith NHS Lothian it is our policy that results should be returned via a secure email such as nhs.scot. Paper copies of reports can be sent via Royal Mail by prior arrangement.
 
All results are interpreted based on previous treponemal results, clinical details and treatment history available to us at the time.
 
Further clinical advice can be obtained by contacting the Microbiology/ Virology Office on 0131 563 3373 Option 1 and asking to speak to the duty syphilis authoriser 

or emailing loth.microbiologyoffice@nhslothian.scot.nhs.uk

 
Further information see www.bashh.org

Syphilis IgG EIA Serology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Confirmation testing may be required. Click here for further information.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Specimen storage for Virology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Out of hours on call service for urgent testing 17.00 - 08.30 weekdays and 16.00- 09.00 weekends.

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

N/A

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

9ml

Rubella IgM Serology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Rubella IgG Serology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, Virology OHS Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Respiratory Syncytial Virus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 the previous day.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

​Throat Swab

Volume - Child 2

Br​onchoalveolar Lavage taken into a Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Brochoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum taken into a Sterile Universal Container

Rotavirus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Same day results available when sample is received into the laboratory by 09:00.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

​Grape sized amount of faeces

Volume - Adult 1

Grape sized amount of faeces

Rhinovirus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 the previous day.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

​Throat Swab

Volume - Child 2

​Bronchoalveolar Lavage taken into Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum taken into a Sterile Universal Container

Pneumocystis jiroveci PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

The duty microbiologist will contact the clinical team to discuss the result and any infection control related issues where appropriate. 

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Same day results available when sample is received into the laboratory by 09:00.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Adult 1

Induced sputum taken into a Sterile Universal Container

Volume - Adult 2

​Bronchoalveolar lavage taken into Sterile Universal Container

Parvovirus B19 IgM Antibody

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Parvovirus B19 IgG Antibody

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Parainfluenza Virus Type 3 PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 the previous day.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

​Throat Swab

Volume - Child 2

​Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced Sputum taken into a Sterile Universal Container

Parainfluenza Virus Type 2 PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 the previous day.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

Throat swab

Volume - Child 2

​Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum taken into a Sterile Universal Container

Parainfluenza Virus Type 1 PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oc is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 the previous day.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

​Throat Swab

Volume - Child 2

​Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum taken into a Sterile Universal Container

Norovirus detection by PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Same day results available when sample is received into the laboratory by 09:00.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult2
Container_Child2
Volume - Child 1

Grape sized amount of faeces

Volume - Child 2

minimum 5ml of Vomit

Volume - Adult 1

Grape sized amount of faeces

Volume - Adult 2

minimum 5ml of Vomit

Mumps Virus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

Parotid duct swab

Volume - Child 2

Urine taken into a Sterile Universal Container

Volume - Adult 1

Parotid duct swab

Volume - Adult 2

Urine taken into Sterile Universal Container

Mumps IgG Serology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oc is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oc). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

7 day

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Metapneumovirus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 the previous day.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

​Throat Swab

Volume - Child 2

​Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Child 3

​Nasopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum, taken into a Sterile Universal Container

Measles Virus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Samples should be transported to the lab promptly; if there is a delay please store at 2-8 oC.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Measles PCR can’t be specifically requested in TRAK or ICE. For throat swabs please order Viral Respiratory PCR; for urine samples please order Virus Detection; for both clearly write that measles testing is required. Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results will be communicated promptly to the requestor (usually by phone).

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Suspected cases of measles need prompt discussion with the Duty Virologist. Samples received without prior discussion will be stored for one week and not tested. 


To contact duty virology:

Mon-Fri 09:00-17:00 - call 0131 536 3373, option 2. If you are unable to get through, please consider emailing (see below) rather than holding.

               
Outwith these hours, the Virology Consultant/ Registrar on call can be contacted via switchboard on 0131 536 1000. Between 22:00-07:00 please email (see below).
 

Emails should be sent to loth.virologyadvice@nhs.scot. Please supply: 

requester contact details/ a phone number in case we need to discuss; patient details; clinical presentation; MMR status; travel/contact history

If the case warrants testing Virology will contact East Health Protection Team. 

 

 

Volume - Child 1

Throat swab

Volume - Child 2

​Urine taken into Sterile Universal Container

Volume - Adult 1

Throat swab

Volume - Adult 2

Urine taken into Sterile Universal Container

Measles IgG Serology

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements


Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form, Virology OHS Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Legionella pneumophila PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

The duty microbiologist will contact the clinical team to discuss the result and any infection control related issues where appropriate.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Same day results available when sample is received into the laboratory by 09:00.

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Adult 1

Sputum taken into Sterile Universal Container

Influenza B virus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 on the previous day.

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

Throat Swab

Volume - Child 2

​Broncholalveolar Lavage taken into a Sterile Universal Container

Volume - Child 3

​Nasosopharyngeal Secretions taken into a sterile Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum taken into a Sterile Universal Container

Influenza A virus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Test available 7 days per week. Results are available when sample is received into the laboratory by 15:00 on the previous day.

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Volume - Child 1

Throat Swab

Volume - Child 2

​Bronchoalveolar lavage taken into a 20ml Sterile Universal Conainer

Volume - Child 3

​Nasopharyngeal Secretions taken into Conical Centrifuge Tube

Volume - Adult 1

Throat Swab

Volume - Adult 2

Bronchoalveolar Lavage taken into a Sterile Universal Container

Volume - Adult 3

Induced sputum taken into Sterile Universal Container

HTLV I/II Antibody

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Herpes Virus Type 2 PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

Swab from affected site

Volume - Child 2

​CSF taken into a Sterile Universal Container

Volume - Adult 1

Swab from affected site

Volume - Adult 2

CSF taken into a Sterile Universal Container

Herpes Virus Type 1 PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

Swab from affected site

Volume - Child 2

CSF t​aken into a Sterile Universal Container

Volume - Adult 1

Swab from affected site

Volume - Adult 2

CSF taken into a Sterile Universal Container

HIV Antigen/Antibody

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form Virology OHS Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Hepatitis E Virus IgM

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

 

 

General additional information

Samples are tested Monday to Friday.

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

4.9 ml

Hepatitis E Virus IgG

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

 

General additional information

​Samples are tested Monday to Friday.

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

4.9 ml

Hepatitis C RNA Quantitative PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

7 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Samples are tested twice per week on a Monday and Thursday.

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

9ml

Hepatitis C Antibody

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form, Virology OHS Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Hepatitis B surface Ag

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form, Virology OHS Form for TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Hepatitis B DNA Quantitative PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Out of hours on call service for urgent testing 17.00 - 08.30 weekdays and 16.00- 09.00 weekends.

Anticipated turnaround

14 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

9ml

Hepatitis B DNA for EPP workers

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

How to request

Use appropriate request form, Virology OHS Form. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

30 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please write 'DO NOT Split' on request form. Phone to inform duty Virologist on 63373. Samples are referred for testing.

 

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

9ml

Hepatitis B core antibody

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form, Virology OHS Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Hepatitis A IgM

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Hepatitis A IgG

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form, GUM Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Enterovirus RNA

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

3 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Volume - Child 1

​Grape sized amount of faeces

Volume - Child 2

​CSF taken into Sterile Universal Container

Volume - Child 3

Swab from affected site

Volume - Adult 1

Grape sized amount of faeces

Volume - Adult 2

CSF taken into Sterile Universal Container

Volume - Adult 3

Swab from affected site

Epstein-Barr Virus Viral Capsid Antigen IgM

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Epstein-Barr Virus Viral Capsid Antigen IgG

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Epstein-Barr Virus DNA Quantitative PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

2.7 ml

Epstein-Barr Virus nuclear antigen

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2 ml blood

Volume - Adult 1

4.9 ml

Cytomegalovirus IgM

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Cytomegalovirus IgG

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Adult 1

4.9 ml

Cytomegalovirus DNA Quantitative PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

 

Urine and Salivary swab samples are tested for CMV PCR in babies under 21 days old.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1-2ml blood

Volume - Child 2

1-2ml urine sample

Volume - Child 3

​Salivary swab

Volume - Child 4

​​Tissue sample (Post-Mortem)

Volume - Adult 1

2.7 ml

Volume - Adult 2

​1-5ml Amniotic Fluid

Volume - Adult 3

​Biopsy tissue sample from site into saline

Volume - Adult 4

​Tissue sample (Post-Mortem)

Bordetella pertussis PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

For all cases within 21 days of date of onset please send a throat swab in virus transport medium for pertussis PCR to confirm the diagnosis. Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag/ sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

The duty microbiologist will contact the clinical team to discuss the result and any infection control related issues where appropriate.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Child3
Container_Child4
Volume - Child 1

Throat Swab

Preferred sample.

Volume - Child 2

Bronchoalveolar lavage taken into a Sterile Universal Container​

Volume - Child 3

​Nasopharyngeal secretions taken into a Sterile Conical Centrifuge Tube

Volume - Child 4

Dry pernasal swab

Volume - Adult 1

Throat swab

Preferred sample.

Volume - Adult 2

​Bronchoalveolar lavage taken into a Sterile Universal Container

Bacterial meningitis Screen by PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

Samples for Bacterial Meningitis PCR (a multiplex PCR to detect Streptococcus pneumoniae, Neisseria meningiditis and Haemophilus influenzae) should be sent to the Laboratory without delay. Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag/ sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00 Weekends 9.00 - 16.00

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

The duty microbiologist will contact the clinical team to discuss the result and any infection control related issues where appropriate. 

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Child 1

​1- 2ml blood

Preferred sample.

Volume - Child 2

CSF taken into Sterile Universal Container

Volume - Adult 1

2.7 ml

Preferred sample.

Volume - Adult 2

CSF taken into Sterile Universal Container

Anti Streptolysin O Titre

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag/ sample.

Badly haemolysed samples cannot be tested.

How to request

Use appropriate Virology Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Anticipated turnaround

7 Days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Bacteriologist and are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Child 1

2ml

Volume - Adult 1

4.9 ml

Antibody to Hepatitis B surface Antigen

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag/ sample.

How to request

Use appropriate Virology Request Form, Virology GUM Request Form or TRAK. Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

Out of hours on call service for urgent testing 17.00 - 08.30 weekdays and 16.00- 09.00 weekends.

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Results are available in the patient’s records.

Static information/disclaimer

​False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Child1
Volume - Adult 1

4.9 ml

Antenatal Screening

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

​Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag/ sample.

How to request

Use appropriate Virology Antenatal Request Form.

Forms must be fully completed with Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre).

Please ensure that the form has signed consent for testing by either the patient, or midwife, on behalf of the patient. Ensure that accepted tests boxes are ticked appropriately on test request from.

Availability

Weekdays 08.30 - 17.00

 

 

Anticipated turnaround

7 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist and are available in the patient’s records.

Static information/disclaimer

False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

​Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Volume - Adult 1

4.9 ml

Adenovirus PCR

Transport arrangements

Inter-site van shuttle service, GP van service, External hospital van service, Couriers, Hospital porter collection (refer to collection times posted in wards / departments), Hospital Pneumatic Tube System (PTS)

Sample storage arrangements

Specimen transport arrangements must be in accordance with current postal and transport regulations. Samples should be transported to the laboratory without delay. If processing is delayed, refrigeration at 2-8 oC is preferable to storage at room temperature for all samples, with the exception of EDTA blood samples. EDTA blood samples must be stored at room temperature (19-23 oC). Patient samples can be transported at ambient temperature.

Special instructions for collection

Clinical samples must be collected into leak-proof containers and placed into a sealed bag with absorbent material. Patient samples must be individually packaged and not mixed with other patient samples. Any appropriate hazard labelling should be clearly visible on the sample bag / sample.

How to request

Use appropriate TRAK or ICE barcode labels which include Patient Identifier Number (CHI), Forename, Surname, Date of Birth, Gender and Location of patient (hospital and ward or primary care centre). Use Virology Request Form only if TRAK or ICE ordering system is unavailable.

Availability

Weekdays 08.30 - 17.00

Weekends 9.00 - 16.00

 

Anticipated turnaround

2 days

What happens if the result is positive or abnormal

Positive results are notified to the Duty Virologist / Bacteriologist and are available in the patient’s records.

Static information/disclaimer

False negative results may occur for a variety of reasons including: inappropriate timing of sample collection, inappropriate sample type, inappropriate sample storage and presence of virus below the detectable limit of the assay. New and emerging variants may also occur which may not be detected by specific assays. Towards the limit of detection of an assay sampling variation will result in lower reproducibility. Haemolysed or lipaemic samples can also cause interference with assay results.

General additional information

Please contact virologyadvice@nhslothian.scot.nhs.uk for all non-urgent clinical enquiries.

Container_Adult1
Container_Adult4
Container_Child1
Container_Child4
Container_Child5
Volume - Child 1

​1 - 2ml blood

Volume - Child 2

​Grape sized amount of faeces

Volume - Child 3

​Throat Swab

Volume - Child 4

Bronchoalveolar lavage taken into Sterile Universal Container

Volume - Child 5

​Nasopharyngeal Secretions taken into Conical Centrifuge Tube

Volume - Adult 1

2.7 ml

Volume - Adult 2

Grape sized amount of faeces

Volume - Adult 3

Throat Swab

Volume - Adult 4

Broncoalveolar Lavage taken into Sterile Universal

Prenatal Rapid QF-PCR (CVS)

Transport arrangements

Courier + cool box

Sample storage arrangements

Same day process

How to request

Referral form from Laboratory main website

Availability

Mon-Fri

Anticipated turnaround

3d

What happens if the result is positive or abnormal

All reports sent to referring clinician

Container_Adult2
Volume - Adult 1

20-30mg Chorionic Villus

Volume - Adult 2

3-5ml maternal Blood

Additive - Adult 1

Transport Medium supplied by Laboratory

Prenatal Karyotype and/or FISH and/or Array (CVS)

Transport arrangements

Courier + cool box

Sample storage arrangements

Same day process

How to request

Referral form from Laboratory

Availability

Mon-Fri

Anticipated turnaround

14d

What happens if the result is positive or abnormal

All reports sent to referring clinician

Container_Adult2
Container_Adult3
Volume - Adult 1

20-30mg Chorionic Villus

Volume - Adult 2

​3-5mls (1 tube for each parent)

Volume - Adult 3

​3-5mls (1 tube for each parent)

Additive - Adult 1

Transport Medium supplied by Laboratory

Prenatal Rapid QF-PCR (Fluid)

Transport arrangements

Courier, TAXI

Sample storage arrangements

Fridge

How to request

Referral form from Laboratory main website

Availability

Mon-Fri

Anticipated turnaround

3d

What happens if the result is positive or abnormal

All reports sent to referring clinician

Container_Adult1
Container_Adult2
Volume - Adult 1

8ml Amniotic Fluid

Volume - Adult 2

3ml Maternal Blood

Prenatal Karyotype and/or FISH and/or Array (Fluid)

Transport arrangements

Courier, TAXI

Sample storage arrangements

Fridge

How to request

Referral form from Laboratory main website

Availability

Mon-Fri

Anticipated turnaround

14d

What happens if the result is positive or abnormal

All reports sent to referring clinician

Container_Adult1
Container_Adult2
Container_Adult4
Container_Adult5
Volume - Adult 1

8ml Amniotic Fluid (for culture)

Volume - Adult 2

8ml Amniotic Fluid (for DNA extraction)

Volume - Adult 4

 

3-5mls (1 tube from each parent)

 

Volume - Adult 5

​3-5mls (1 tube from each parent)

Acquired karyotype and/or FISH and/or Array (Biopsy)

Transport arrangements

Courier or TAXI

Sample storage arrangements

Fridge

How to request

Referral form from Laboratory main website

Availability

Mon-Fri

Anticipated turnaround

10-28d

What happens if the result is positive or abnormal

All reports sent to referring clinician

Volume - Child 1

Tumour/lymph node biopsy

Additive - Child 1

Transport medium supplied by laboratory

Volume - Adult 1

Tumour/lymph node biopsy

Additive - Adult 1

Transport medium supplied by laboratory

Acquired karyotype and/or FISH (Bone Marrow)

Transport arrangements

Courier or TAXI

Sample storage arrangements

Room temperature

How to request

Referral form from Laboratory main website

Availability

Mon-Fri

Anticipated turnaround

10-28d

What happens if the result is positive or abnormal

All reports sent to referring clinician

Volume - Child 1

as adult

Volume - Adult 1

Bone marrow apsirate

Additive - Adult 1

saline/heparin supplied by laboratory

Constitutional Array (Blood)

Transport arrangements

1st Class Post or Courier

Sample storage arrangements

Fridge

How to request

Referral form from Laboratory main website

Availability

Mon-Fri

Anticipated turnaround

10-28d

What happens if the result is positive or abnormal

All reports sent to referring clinician

General additional information

Parental samples required (1xLithium Heparin + 1xEDTA from each parent)

Container_Adult1
Container_Adult2
Container_Child1
Container_Child2
Volume - Child 1

1-2ml

Volume - Child 2

1-2ml

Volume - Adult 1

2-5ml Blood

Volume - Adult 2

3ml Blood

Gastric biopsy for Helicobacter

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: for patients with suspected H.pylori infection in whom the choice of antibiotic is reduced due to hypersensitivity, known local high resistance rates, or previous treatment with clarithromycin, metronidazole, and a quinolone. 

Samples preferably submitted Mon - Wed to allow for posting to Reference Laboratory.

Dent's Medium is no longer available. Please send sample in sterile physiological saline (preservative free).

How to request

Via Trak ("Helicobacter Culture (Biopsy)").

Availability

0900-1700, Mon - Fri (RIE or SJH). 

Anticipated turnaround

Up to 14 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information
Container_Adult1
Container_Child1
Volume - Child 1

As adult

Additive - Adult 1

Sterile physiological saline (preservative free)

MRSA Screen

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients where MRSA colonisation is required to be screened for, or where MRSA infection is suspected. Please see the Infection Prevention and Contol Policy about who requires a Clinical Risk Assessment and Screening on admission.

Usual sites required: Nose, perineum (throat swab if perineal swab not clinically possible) and any wound. However please see Infection Prevention and Contol Policy re: different policies for different departments. EOPD SJH should also take eye swabs. Routine bacteriological swabs are less sensitive for MRSA so please specifically send separate swabs labelled for MRSA screening.

How to request

Via Trak (Search "MRSA" and specify whether National Screening (Nasal and Perineal), Standard Screening or 116/118 Screening).

Availability

0900-2000 (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 3 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

MRSA screens undertaken whilst a patient is on antibiotics may give false negative results; therefore screening should be undertaken 48 hours after completion of antibiotics. Send separate samples for routine culture if needed as these will only be for MRSA testing. Do not use dry swabs.

Container_Adult1
Container_Child1

Duodenal/ Jejunal aspirate - for Giardia lamblia

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients with suspected Giardia lamblia infection, though stool examination for cysts and/or PCR should be done first. This test can identify Giardia lamblia/duodenalis trophozoites in duodenal fluid.

Duodenal aspirates can be collected using the string test. Please call the lab prior to collection to ensure there is someone available to process the sample.

How to request

 Request form.

Availability

Please call the microbiology laboratory prior to testing and sending samples.

Anticipated turnaround

Up to 6 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Giardia lamblia trophozoites are also known as Giardia duodenalis trophozoites

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Volume - Adult 1

Up to 20 ml

Additive - Adult 1

NONE

Swab - Routine C & S - any site

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: In patients where a bacterial or fungal infection is suspected. Please put exact anatomical location on the request.

Wound swabs: If dry consider moistening the swab with sterile water prior to sampling to increase chance of organism recovery. Clean +/- debride the wound prior to sampling, and obtain the deepest sample possible.

How to request

GP comms, or via Trak ("C&S - Swabs" and specify correct anatomical site), or request form.

Availability

0900-2000 (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Telephoned by microbiologist if required, otherwise result will appear on electronically.

General additional information

See RefHelp for guidance on taking of genital swabs; dry swabs (with no gel transport medium) should not be used.

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Contact lens fluid - Routine M, C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: In patients where acanthamoebic, bacterial or fungal eye infections related to contact lenses are suspected.

Send fluid in the contact lens case, or a sterile universal container.

How to request

Via Trak ("C&S - Misc" then specify "Contact lens Fluid"), or request form.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist if required, otherwise result will appear on electronically.

General additional information

​If wishing for Acanthamoeba investigation, it needs to go in special transport medium available at PAEP, and it is sent direct to the Glasgow Reference Lab from the requester and not via the laboratory at RIE.

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Volume - Adult 1

1-20 ml

Additive - Adult 1

NONE

Contact lenses - Routine C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

 If processing is delayed, refrigeration (4-6°C) is preferable to storage at ambient temperature.

Special instructions for collection

Useful: In patients where bacterial, fungal or acanthamoebic eye infections related to contact lenses are suspected. Routine culture is on request by named Ophthalmology Consultant only.

Send in the contact lens case, or a sterile universal container.

How to request

 Via Trak ("C&S - Misc" then specify "Contact lens"), or request form.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

​If wishing for Acanthamoeba investigation, it needs to go in special transport medium available at PAEP, and it is sent direct to the Glasgow Reference Lab from the requester and not via the laboratory at RIE.

Container_Adult2
Container_Child2
Volume - Child 1

As adult

Additive - Adult 1

NONE

Corneal scrapings - Routine M, C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store at room temperature.

Special instructions for collection

Useful: in patients where bacterial or fungal or acanthamoebic keratitis is suspected. Keratitis, where the cornea is inflamed, is a serious condition which may progress to perforation and blindness if treatment is unsuccessful. Pre-disposing factors include topical corticosteroid use, and contact lens use, or prior ocular disease. 

Collection: These should be collected by an ophthalmic surgeon. Due to the small amount of material collected, sample best inoculated at the bedside so culture plates and slides are available at Princess Alexandra Eye Pavillion for samples coming to the RIE and from the Bacteriology lab at SJH for samples from SJH. If using a slide, mark the slide with a pen circle around the sample, and the patients details as shown above. Innoculate the surface of the agar; if the syringe needle is dug deep into the agar this will delay signs of bacterial growth. 

See document about collection of corneal scrapings.

How to request

Via Trak ("C&S - Tissue" then specify sample site e.g. 'Eye,Rt') or request form.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

​If wishing for Acanthamoeba investigation, it needs to go in special transport medium available at PAEP, and it is sent direct to the Glasgow Reference Lab from the requester and not via the laboratory at RIE.

Container_Adult1
Container_Adult2
Container_Adult3
Container_Adult4
Container_Child2
Volume - Child 1

As adult

Aqueous and vitreous fluids, and vitreous biopsy - Routine C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

 If processing is delayed, refrigeration (4-6°C) is preferable to storage at ambient temperature.

Special instructions for collection

Useful: in patients where bacterial, fungal or acanthamoebic eye infections are suspected.

Will be collected by ophthalmic surgeon. 

 

How to request

Via Trak ("C&S - Fluid" then specify sample site e.g. 'Fluid,aqueous humour' or 'Fluid, vitreous humour') or request form.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

​If wishing for Acanthamoeba investigation, it needs to go in special transport medium available at PAEP, and it is sent direct to the Glasgow Reference Lab from the requester and not via the laboratory at RIE.

IUCD C & S

Transport arrangements

Transport as soon as is practicable

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Only useful in suspected uterine/pelvic actinomycosis. Not processed routinely.

How to request

Via GP order comms or request form.

Availability

9am-6pm (RIE)

Anticipated turnaround

5 days for routine or 20 days for Actinomyces.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Actinomyces culture is on request only.

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Additive - Adult 1

NONE

Gastric washings (Mycobacteria only)

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

Don't delay in transporting to the lab; stomach acid will cause deterioration of the organisms.

Special instructions for collection

Useful: in patients with suspected mycobacterial lung infection who are not able to expectorate sputum but are suspected of swallowing respiratory secretions. Particularly useful in children. This is not suitable for routine bacterial sputum culture and sensitivities.

Note induced sputum is preferable to gastric washings, if available. The patient should be nil by mouth from midnight, and samples collected first thing in the morning before breakfast. Insert the largest bore NG tube that is comfortable without lubrication (because it's bacteriostatic). Aspirate stomach contents: if less than 10mls of mucus is collected, then instill 10-20mls of sterile water (not saline) down the NG tube and quickly reaspirate before putting in specimen container. Collect 3 separate gastric washings this way on three consecutive days and transport to the laboratory quickly to avoid stomach acid breaking down the sample.

How to request

Via Trak ("Mycobacteria TB Ix - Fluids" then specify (Aspirate,gastric Mycobact) or via request form.

Availability

0900-1700, Monday - Friday (RIE)

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Note that microscopy of gastric washings can be misleading as other acid-fast bacilli are normally present in the stomach. 

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As adult

Additive - Adult 1

NONE

Urine - Routine M, C & S

Transport arrangements

Transport plain white top urine containers to lab within 4 hours of collection unrefrigerated or within 48 hours if refrigerated.

Red top boric acid urine containers must arrive in lab within 96 hours of collection.

If clinically urgent, urine samples can be delivered direct to laboratory reception at the RIE which is open 24 hours a day, 7 days a week, 365 days a year.

Sample storage arrangements

Sterile Universal: store in the fridge (4-6oC);

Boric acid: store at room temperature or store in the fridge (4-6oC)

Special instructions for collection

Useful: in patients with suspected urinary tract infection, including acute and chronic pyelonephritis, cystitis, urethritis, epididymitis, and prostatitis.  

When suspecting catheter associated urinary tract infections, don't use urine dipsticks. Urine culture is often positive in a catheterised patient and won't differentiate between bacterial colonisation and infection.

Catheter associated urinary tract infection is diagnosed clinically based on

  • fever (though this may be absent in older patients),
  • no evidence of an alternative source of infection,
  • and any or all of the following:
    • rigors
    • supra-pubic or flank pain,
    • frank haematuria
    • delirium.

A positive urine culture without symptoms (asymptomatic bacteriuria) in men & non-pregnant women should not be treated. Do not routinely use a urinalysis/dipstick to diagnose a urinary tract infection. Urinalysis results in antibiotic over-prescribing, and in men and older women > 65 years old has a high false positive and false negative rate and should not be used. In women under 65, nitrites on urinalysis indicate that a UTI is possible, but only when symptoms are present.

Special Instructions for Collection

Transport plain white top universal urine containers to lab within 4 hours of collection unrefrigerated (or within 48 hours if refrigerated). Red top boric acid urine containers must arrive in lab within 96 hours of collection. Boric acid is a preservative which helps prevent cell degradation and bacterial overgrowth if the urine sample is not processed within 4 hours. Please ensure red top boric acid containers are filled appropriately up to the fill line with a minimum volume of 15ml; underfilling may inhibit bacterial growth. Do not tip out or remove the white powder before filling. If only a small sample is available e.g paediatric or suprapubic aspirates, please use a white-topped universal container. If clinically urgent, urine samples can be delivered direct to laboratory reception at the RIE which is open 24 hours a day, 7 days a week, 365 days a year.

How to request

Both RIE and SJH Microbiology laboratories do not routinely do urine microscopy on all samples.

Urine microscopy can be performed in the following circumstances:

  • Children under 3 years old
  • ?Glomerulonephritis
  • Post-renal transplant patients

Urine culture can be requested electronically by TRAK ("C&S - Urine (Microbiology)"), or GP Order Comms, or by submitting with a request form.

Availability

Test is available 24 hours a day, 7 days a week, 365 days a year at RIE Microbiology lab.

At SJH, test is not available outside SJH Microbiology lab opening hours - please send urgent samples to RIE, or store in a refrigerator.

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Result will appear electronically and if necessary phoned by a microbiologist.

For Adults -​Guidance on the interpretation of urine results can be found here:

or here:

https://www.sapg.scot/quality-improvement/primary-care/urinary-tract-infections/

General additional information

MSU, CSU, CCU, SPA all come under this investigation.

Container_Child1
Volume - Child 1

1 - 20 ml

Volume - Child 2

​15 - 20ml.

Note minimum required volume 15ml.

Volume - Adult 1

15 - 20 ml.

Note minimum required volume 15ml

Volume - Adult 2

1- 20 ml

Skin, Nail, hair for Mycology

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at room temperature

Special instructions for collection

Mycotrans Pack only. To obtain Mycotrans packs, please contact the Mycology laboratory on 0131 242 6049 (extension 26049) to request packs and slides.

How to request

Via TRAK or by yellow request form or GP order comms

Availability

9 am - 5 pm Mon - Fri

Anticipated turnaround

Microscopy 2 days Culture up to 28 days

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Sputum for Mycology

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at 4-6o C

Special instructions for collection

Collect total sputum produced over three days; collect 8 hourly and refrigerate until transport to laboratory available.

How to request

Via TRAK or by yellow Mycology request form or GP order comms

Availability

9 am - 5 pm Mon - Fri

Anticipated turnaround

Microscopy 2 days Culture up to 20 days

What happens if the result is positive or abnormal

Telephoned by Microbiologist

General additional information

This is an investigation for Aspergillosis and other fungi

Container_Adult1
Container_Child2
Volume - Child 1

As adult

Volume - Adult 1

See below for instructions

Additive - Adult 1

NONE

Sputum for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients with suspected mycobacterial lung infection.

Early morning sputum samples (shortly after the patient wakes) have the highest yield. If the patient is not expectorating and mycobacterial disease needs excluded, then induce 2-3 sputum samples on three consecutive days and transport to the laboratory.

How to request

GP comms, via Trak ("Mycobacteria TB Ix - Respiratory(Routine) and specify site), or request form.

Availability

0900-1700, Monday - Friday (RIE)

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Volume - Adult 1

Up to 5ml

Volume - Adult 2

Up to 5ml

Additive - Adult 1

NONE

Sputum - Routine C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients with suspected bacterial pneumonia.

How to request

GP comms, via Trak ("C&S - Respiratory (Routine Bacteriology), request form. Please indicate clearly if cystic fibrosis or bronchiectasis history.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Result will appear electronically and if necessary phoned by a microbiologist.

General additional information

Please send a separate sample if TB or other mycobacterial infection is suspected.

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Volume - Child 2

As adult

Additive - Child 1

None

Volume - Adult 1

1-10 ml

Volume - Adult 2

1-10 ml

Additive - Adult 1

NONE

Additive - Adult 2

None

Peritoneal Dialysis fluid - Routine M, C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store neat samples in the fridge (4-6°C). If blood culture bottles have also been inoculated then store these at room temperature. 

Special instructions for collection

Useful: in patients with suspected peritonitis related to peritoneal dialysis.

Innoculate fluid into blood culture bottles for a higher yeild in addition to a sterile universal container, but be clear to specify peritoneal fluid, not blood.

How to request

Via Trak ("C&S - Fluids" and specify whether dialysis related or not), or  request form or GP order comms.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Container_Adult2
Container_Child2
Volume - Child 1

As adult

Volume - Child 2

8-10ml

Volume - Child 3

Up tp 4 ml

Volume - Adult 1

20 ml

Volume - Adult 2

8 - 10 ml

Additive - Adult 1

NONE

Semen for Schistosomes

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients with suspected Schistosoma haematobium (compatible symptoms e.g. haematospermia and associated travel history), often performed in conjunction with urine and stool examination.

 

How to request

 Request form or GP order comms.

Availability

0900-1800 (RIE) or 0900-1700 (SJH)

Anticipated turnaround

Up to 6 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Volume - Child 1

As adult

Volume - Adult 1

1 - 20 ml

Additive - Adult 1

NONE

Scabies microscopy

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store at room temperature.

Special instructions for collection

Useful: in patients with rash and suspected Sarcoptes scabei infection.

Unroof the burrow hole. Using a scalpel or needle with immersion or mineral oil on it (which mites adhere to), scrape the superficial layer of skin 6 or 7 times vigorously (stratum corneum). Place the scrapings in oil on a microscope slide, place a second slide on top of the specimen and tape together, and safely transport  to the laboratory. Additionally small piece of tissue can be sent with a few drops of oil on it.

How to request

 Request form or GP comms.

Availability

0900-1800 (RIE) or 0900-1700 (SJH)

Anticipated turnaround

Up to 6 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Whilst the sensitivity of skin scrapings is low, it is very specific and a mite or eggs seen under the microscope will remove any diagnostic doubt.

Volume - Child 1

Skin scrapings

Additive - Child 1

None

Volume - Adult 1

Skin scrapings

Additive - Adult 1

NONE

Fluids for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients where fluid has been aspirated from a sterile site and mycobacterial infection is suspected.

Do not submit specimen in a syringe, and don't submit a swab of the fluid.

How to request

Via Trak ("Mycobacteria TB Ix - Fluids" then specify specimen type and site). Alternatively, order via request form.

Availability

0900-1700, Monday - Friday (RIE)

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As adult

Volume - Adult 1

1-20 ml

Additive - Adult 1

NONE

Sterile fluid other sites - Routine M, C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store neat samples in the fridge (4-6°C). If blood culture bottles have also been inoculated then store these at room temperature. 

Special instructions for collection

Useful: in patients where fluid has been aspirated from a sterile site and infection is suspected.

Do not submit specimen in a syringe. If infection is within the differential diagnosis, innoculate fluid into blood culture bottles in addition to a sterile universal container.

How to request

GP comms, via Trak ("C&S - Fluids" then specify specimen type and site) or via request form. 

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 6 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

This includes all fluid from a sterile sites including pus and aspirates.

Volume - Child 1

As adult

Volume - Adult 1

1-20 ml

Additive - Adult 1

NONE

Joint/Bursa aspirate - Routine M,C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store neat samples in the fridge (4-6°C). If blood culture bottles have also been inoculated then store these at room temperature. 

Special instructions for collection

Useful: in patients where septic arthritis, bursitis, or crystal arthropathy is suspected.

Do not submit specimen in a syringe. If infection is within the differential diagnosis, innoculate fluid into blood culture bottles in addition to a sterile universal container.

How to request

GP comms, via Trak ("C&S - Fluids" then specify specimen type "Fluid, synovial") or via request form.

Availability

24 hours (RIE), 0900-1700 (SJH)

Anticipated turnaround

Up to 6 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Microscopy for crystal detection is done routinely.

Container_Adult2
Volume - Child 1

As adult

Volume - Child 2

Up to 4 ml

Volume - Adult 1

1 - 20 ml

Volume - Adult 2

8 - 10 ml in each bottle

Additive - Adult 1

NONE

Urine for Schistosomes

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients with suspected Schistosoma haematobium infection (compatible symptoms e.g. dysuria, terminal haematuria, hydronephrosis and associated travel history), often performed in conjunction with stool examination.

Wait until at least 4 weeks after exposure before sending samples for microscopy. Collect terminal urine sample between 10am and 2pm (the last 10-20mls of a urine stream). 

 

How to request

GP comms, via Trak ("Urine Parisitology") or via request form.

Availability

0900-1800 (RIE), 0900-1700 (SJH)

Anticipated turnaround

6 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Volume - Child 1

As adult

Additive - Adult 1

NONE

Early morning urine for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients in whom disseminated or urinary TB is suspected including tuberculous epididymitis

Collect the total volume of first urine sample of the day. Send three samples on consecutive days. Do not overfill containers, and ensure there is absorbent material with the sample container in the specimen bag. If there is not an appropriate container for a whole Early Morning Urine (EMU) sample, a midstream EMU sample is an acceptable, but suboptimal alternative.

How to request

GP comms, or via Trak ("Mycobacteria TB Ix - Urine" then specify whether early morning, or where in urinary tract sample from). Alternatively request on form.

Availability

0900-1700, Monday - Friday (RIE)

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As adult

Volume - Adult 1

Total volume of first urine sample of the day

Additive - Adult 1

NONE

Enterobius vermicularis (pinworm) ova detection

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store at room temperature.

Special instructions for collection

Useful: in patients with pruritus ani, particularly in children, institutionalised patients or household contacts of cases.

Place clear sticky tape over anus and surrounding skin first thing in the morning before washing. Remove immediately and stick tape onto glass slide. Label slide with patient’s name and send slide in slide holder to laboratory for microscopy.

How to request

GP comms, via Trak ("Sellotape for Enterobius") or by request form.

Availability

0900-1800 (RIE). 0900-1700 (SJH).

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Available on Trak.

Volume - Child 1

As adult

Parasite for Identification

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients where a parasite has been collected,or is known to be present in stool and urine, and identification is required.

Please collect in a universal container.

How to request

GP comms, or via Trak ('Enteric Ix - parasite identification' or 'Urine - parasite identification') or by request form.

Availability

0900-1800 (RIE). 0900-1700 (SJH).

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Available on Trak

General additional information

Consider whether requesting Enterobius vermicularis ova/pinworm on a sellotape slide is more appropriate.

Volume - Child 1

As adult

Additive - Adult 1

NONE

Faeces - Routine M, C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection
Useful: in patients with suspected bacterial or parasitic gut infections. Please detail any relevant symptoms and travel history when requesting.
 
Collect 2-3mls of liquid or solid faeces in 20ml Universal stool container. Direct patients to information leaflet 'How should I collect and store a poo (stool) sample?' 
How to request

Via Trak (For RIE/WGH select: "Faeces - Micro ADULT WGH/RIE only", for SJH...), via request form or via GP comms. If requiring ova, cysts and parasites, please state request in clinical details and ensure symptoms and travel history included.

 

Availability

0900-1800 (RIE). 0900-1700 (SJH).

Anticipated turnaround

5 - 12 days, depending on clinical details.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For ova, cysts and parasites (OCP) testing:

RIE and WGH: PCR for Giardia lamblia, Entamoeba histolytica and Cryptosporidium is performed on stools requesting microscopy. Further microscopy based investigation is performed for other parasites based on clinical details given.

SJH: Investigation for OCP is based on clinical details and is performed by microscopy only.  PCR will be performed on any sample where mention of amoebic dysentery is made, and on specific request. PCR is carried out at the RIE site but can be requested from SJH laboratory when required.

All diarrhoeal stools from patients ≥3 years old will automatically be tested for Clostridioides difficile toxin.

 

Volume - Child 1

As adult

Volume - Adult 1

2-3ml

Additive - Adult 1

NONE

Cryptococcal antigen serology

Transport arrangements
Transport as soon as practicable
Sample storage arrangements
Store at 4-6o C
How to request
Via TRAK or by request form
Availability
9 am - 5 pm Mon - Fri
Anticipated turnaround
4 days
What happens if the result is positive or abnormal
Telephoned by Microbiologist
General additional information

CSF can also have this test performed on it.

Container_Adult1
Container_Child1
Volume - Child 1

1-5 ml

Volume - Adult 1
5-9ml
Additive - Adult 1
NONE

Shunts and Access devices - Rountine M, C & S

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients with suspected shunt or ventricular access device infections.

Aseptic technique essential.

How to request

Via Trak ("C&S - Miscellaneous" and then specify specimen site "shunt" or "ventricular access device") or request form.

Availability

24 hours (RIE). 0900-1700 (SJH).

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Volume - Child 1

As adult

Additive - Adult 1

NONE

Cerebrospinal fluid - Cryptococcal antigen

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at 4-6o C

How to request

Via TRAK or by yellow request form

Availability

9 am - 5 pm Mon - Fri (Mycology)

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Telephoned by Microbiologist

Volume - Child 1

As adult

Volume - Adult 1

5 ml

Additive - Adult 1

NONE

Cerebrospinal fluid for TB

Transport arrangements

Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients suspected of having TB meningitis.

Please collect a minimum of 6mls for mycobacterial analysis, in a separate bottle/sterile universal container to other investigations.

How to request

Via Trak (Mycobacteria TB Ix - CSF) or request form.

Availability

0900-1700, Mon - Fri (RIE).

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Please always send a separate sample, where possible, directly for TB investigations.

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As adult

Volume - Adult 1

Minimum 6 ml volume

Additive - Adult 1

NONE

Cerebrospinal fluid Routine C & S at WGH

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting to lab, store at room temperature.

Special instructions for collection

Please send separate samples for cell count/microscopy (processed in Haematology at WGH) and culture and sensitivity (processed in microbiology at RIE). For investigation of CNS infection, please send four routine sterile containers with CSF, labelled in sequential order of collection. Send container 1 to to biochemistry (cell count, protein and glucose +/- xanthochromia), 2 to haematology for cell count, 3 to microbiology (RIE) for culture and 4 to virology (at RIE for PCR). Ensure a paired serum glucose is also sent to allow interpretation of the CSF glucose. 

How to request

Via Trak (C&S - CSF) or request form.

Availability

CSF Microscopy is available 24/7 at the Haematology laboratory at the Western General Hospital.

Anticipated turnaround

Microscopy within 30 minutes of receipt. Culture: up to 4 days. 

What happens if the result is positive or abnormal

Microscopy telephoned by BMS staff. Abnormal or positive results phoned by microbiologist.

General additional information

If the patient is immunocompromised, further tests can be discussed with the clinical Microbiologist. Do not send samples through pneumatic tube system, deliver precious samples by hand. Separate samples should be taken for each discipline required e.g. Haematology, biochemistry, microbiology, mycobacteria, pathology.

Culture and Gram stain performed at RIE Bacteriology. Please send a separate sample to Bacteriology at RIE.

Volume - Adult 1

1-3ml

Additive - Adult 1

NONE

Cerebrospinal fluid - Routine M, C & S at SJH

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting to lab, store at room temperature. Do not put CSF samples for Bacteriology in the out of hours Microbiology fridge at SJH.

Special instructions for collection

For investigation of CNS infection, please send four routine sterile containers with CSF, labelled in sequential order of collection. Send container 1 and 3 to microbiology for cell counts, culture and sensitivity and send container 2 to virology (for PCR) and 4 to biochemistry (for protein, glucose +/- xanthochromia +/- lactate). Ensure a paired serum glucose (+/- lactate) is also sent to allow interpretation of the CSF glucose (+/- lactate). 

How to request

Via TRAK (C&S - CSF) or request form. Separate labels are required for each sample bottle. Contact the lab (as per 'Availability' information) to ensure sample is received and processed urgently. 

Availability

The SJH Microbiology Laboratory is open:

0900 - 1700 Mon - Fri, 0900-1600 Sat and Sun.


For CSF samples collected during the above opening times
Once CSF sample is taken
1)            Contact the Microbiology Lab at SJH on ext. 53077 or 53080 to alert them that a sample has been collected (giving patient and contact details);
2)            Hand deliver sample directly to the Microbiology Lab at SJH;
3)            If sample has not arrived within half an hour of phoning,  the laboratory will chase up the sample.
 



CSF samples taken outwith the SJH microbiology lab opening times above
Once CSF sample is taken
1)            Contact the SJH Biochemistry Lab on bleep 3728 to alert them a sample is coming (giving patient and contact details).
2)            Additionally, contact Microbiology BMS at Royal Infirmary of Edinburgh (RIE) on Ext 26021 or Bleep 2900
3)            Hand deliver sample to the Biochemistry Lab at SJH who will arrange transport for the sample to the microbiology lab at the RIE.

Anticipated turnaround

Microscopy within 30 minutes of receipt. Culture: up to 4 days. 

What happens if the result is positive or abnormal

Microscopy telephoned by BMS staff. Abnormal or positive results phoned by microbiologist.

General additional information

This test is useful for:

analysis of CSF including culture and sensitivity for diagnosis of bacterial or fungal meningitis or encephalitis.


If the patient is immunocompromised, further tests can be discussed with the clinical Microbiologist. Do not send samples through pneumatic tube system, deliver precious samples by hand. Separate samples should be taken for each discipline required e.g. biochemistry, microbiology, pathology, virology, mycobacteriology (TB).

Volume - Child 1

As adult

Volume - Adult 1

0.5-3ml

Additive - Adult 1

NONE

Cerebrospinal fluid - M, C & S at RIE, RHCYP and DCN (and all sites OOH)

Transport arrangements

Microscopy for cell count must be performed within 2 hours of specimen collection; please transport to lab as soon as possible.

Sample storage arrangements

If delay in transporting to lab at RIE, store at room temperature.

Special instructions for collection

Analysis of CSF including culture and sensitivity may be useful in the diagnosis of bacterial or fungal meningitis or encephalitis.

For investigation of CNS infection, please send four routine sterile containers with CSF, labelled in sequential order of collection. Send container 1 and 3 to microbiology for cell counts and culture and send container 2 to virology (for PCR) and 4 biochemistry (for protein and glucose +/- xanthochromia). Ensure a paired serum glucose is also sent to allow interpretation of the CSF glucose. 

How to request

Via TRAK (C&S - CSF) or request form

Availability

24 hours

Anticipated turnaround

Microscopy within 30 minutes of receipt. Culture: up to 4 days. 

What happens if the result is positive or abnormal

Microscopy telephoned by BMS staff. Abnormal or positive results phoned by microbiologist.

General additional information

If the patient is immunocompromised, further tests can be discussed with a microbiologist. Do not send samples through pneumatic tube system, deliver precious samples by hand. Separate samples should be taken for each discipline required e.g. Biochemistry, microbiology, pathology, mycobacteria.

Volume - Child 1

As adult

Volume - Adult 1

0.5-3ml

Additive - Adult 1

NONE

Chlamydia / Gonorrhoea PCR (swab, other site)

Transport arrangements

Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

There is minimal validation data on the use of GC NAATs on extragenital specimens such as eye swabs. However, taking a swab in cases where extragenital infection is suspected is appropriate.

Please do not use the red-topped virology transport medium (even though that also mentions chlamydia on its packaging). Due to the high sensitivity of all NAAT testing, extra care must be taken in both the clinical and laboratory settings to prevent contamination of samples (and thus false positive results).

How to request

GP comms, via Trak ("Chlamydia Gonorrhoea dual" then under specimen type select site e.g. "eye, throat, or self taken swab"), or by request form.

Availability

0900-1700, Mon - Fri.

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Will be electronically available.

General additional information

Please see Refhelp page on Chlamydia and Gonorrhoea NAAT testing for further information re: sample collection. 

Additive - Child 1
 

Liquid included in container should be retained.

 

Additive - Adult 1
 

Liquid included in container should be retained.

 

Chlamydia / Gonorrhoea PCR (genital specimen)

Transport arrangements

Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: In patients where Chlamydia or Gonorrhoea is suspected at a genital site, including low vaginal swabs, cervical swab, rectal or urethral swabs. Take pharyngeal and rectal swabs routinely in MSM.

For women, self (or clinician) taken low vaginal swab, which can be taken without a speculum (SOLV- Self-Obtained Low Vaginal Swab) is preferred even if speculum examination is being performed (as there is good evidence that a low vaginal swab is more sensitive than a clinician-taken endocervical swab for Chlamydia).

In men, send a urethral, rectal and/or pharyngeal swab based on sexual and clinical history. Please do not use the red-topped virology transport medium (even though that also mentions chlamydia on its packaging). Due to the high sensitivity of all NAAT testing, extra care must be taken in both the clinical and laboratory settings to prevent contamination of samples (and thus false positive results).

How to request

By GP comms, via Trak ("Chlamydia Gonorrhoea dual" then under specimen type select whether cervical, vaginal, urethral or rectal), or by request form. 

Availability

0900-1700, Mon - Fri (RIE)

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Electronically available.

General additional information

Please see Refhelp page on Chlamydia and Gonorrhoea NAAT testing for further information re: sample collection. 

Additive - Child 1
 

Liquid included in container should be retained.

 

Additive - Adult 1
 

Liquid included in container should be retained.

 

Chlamydia / Gonorrhoea PCR (urine)

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in male patients suspected of having Chlamydia or Gonorrhoea infection. Urine testing for Chlamydia and Gonorrhoea in women is less sensitive than cervical swabs and so routine urine sampling is not recommended. 

Collect First pass urine (the initial part of the urinary stream). The testing kits contain a plastic pipette to transfer urine from the collection container (e.g. universal container) to the orange-topped sample bottle. Only consider urine testing for women if patient isn't menstruating as blood can cause false-negative results). Due to the high sensitivity of all NAAT testing, extra care must be taken in both the clinical and laboratory settings to prevent contamination of samples (and thus false positive results).

How to request

By GP comms, or via Trak ("Chlamydia Gonorrhoea dual" then under specimen type select "First void urine"), or by request form.

Availability

0900-1700, Mon - Fri (RIE)

Anticipated turnaround

5 days

What happens if the result is positive or abnormal

Available on Trak.

General additional information

Please see Refhelp page on Chlamydia and Gonorrhoea NAAT testing for further information re: sample collection. 

Volume - Child 1

As adult

Volume - Child 2

As adult

Additive - Child 2

As adult

Volume - Adult 1

5 - 20 ml

Volume - Adult 2

To level indicated on container.

Additive - Adult 1

NONE

Additive - Adult 2

Liquid included in container should be retained.

Broncho-alveolar lavage/Bronchial washings for TB

Transport arrangements

Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in intubated patients, or patients undergoing bronchoscopy, where mycobacterial infection is suspected and where spontanoeus or induced sputum is unavailable or negative.

Contamination of the bronchoscope with tap water, which may contain environmental Mycobacterium species, should be avoided. Minimum sample size is preferably 5ml.

How to request

Via Trak (Mycobacteria TB Ix - Respiratory (BAL/bronch wash) or request form.

Availability

0900-1700, Mon - Fri (RIE)

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Container_Adult2
Container_Child2
Volume - Child 1

As adult

Additive - Child 1

None

Additive - Child 2

None

Volume - Adult 1

1 - 20 ml

Volume - Adult 2

1-20 ml

Additive - Adult 1

NONE

Additive - Adult 2

None

Broncho-alveolar lavage/Bronchial washings - Routine C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in intubated patients, or patients undergoing bronchoscopy, where bacterial or fungal infection is suspected.

How to request

Via Trak ("C&S - Respiratory (BAL/MiniBAL/Bronchial Washings") or request form.

Availability

24 hours (RIE). 0900-1700 (SJH).

Anticipated turnaround

Up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Container_Adult2
Container_Child2
Volume - Child 1

1-20 ml

Volume - Adult 1

1 - 20 ml

Volume - Adult 2

1-20 ml

Additive - Adult 1

NONE

Additive - Adult 2

NONE

Bone Marrow for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store at room temperature.

Special instructions for collection

Useful: in patients with pyrexia of unknown origin, or where tuberculous bone marrow infection is suspected.

Please collect a single TB blood culture bottle with a maximum of 5mls of aspirate. Do not put in pneumatic tube system (glass bottles); must be hand delivered to lab.

How to request

Via Trak ("Mycobacteria TB Ix - Misc incl. Blood" then specify 'Misc' and detail bone marrow in clinical details.

Availability

Contact Scottish Mycobacterial Laboratory for availability. Telephone: 0131 242 6022/3 (Lab) 0131 242 6016 (Office).

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Container_Adult1
Container_Child1
Volume - Child 1

1-5 ml

Volume - Adult 1

1-5 ml

Bone Marrow - Routine C & S

Transport arrangements

Contact Duty Microbiologist before taking sample

Special instructions for collection

Useful: in investigation of PUO, looking for bacterial or fungal infection or when infection is part of the differential diagnosis when investigating haematological abnormalities. A sample should also be sent to the Scottish Mycobacterial Reference Lab (at the RIE) for TB culture.

How to request

Via Trak ("C&S - Misc" and then Specimen type: Bone Marrow)

Availability

0900-1700 Mon - Fri. Please contact the Duty Microbiologist (63373) to arrange.

Anticipated turnaround

Up to 5 days

What happens if the result is positive or abnormal

Telephoned by Microbiologist

Volume - Child 1

1-20 ml

Additive - Child 1

NONE

Volume - Adult 1

1 - 20 ml

Additive - Adult 1

NONE

Arterial/venous line tips - Routine C & S

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: In patients with suspected line infections e.g. site inflamed, fever with central line in situ, where the line has been removed because of suspicion of infection.

Don't send line tips unless there is a suspicion of line-related blood stream infection. Send in conjunction with a pair of peripheral blood cultures. 

How to request

Via Trak ("C&S - Line Tips") then select type of line, and line location.

Availability

24 hours (RIE). 0900-1700 (SJH).

Anticipated turnaround

Culture: up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Urinary catheter tips are not processed - please send a urine sample.

Additive - Child 1

NONE

Additive - Adult 1

NONE

Amoebiasis stool PCR

Transport arrangements
Useful: 

RIE and WGH: Entamoeba histolytica PCR is performed on ALL samples receving OCP microscopy (see 'stool for OCP' for details), or where >2 weeks diarrhoea/amoebic dystentery/waterborne outbreak or exposure/weight loss/failure to thrive are mentioned in clinical details. Also performed on specific request with appropriate clinical detail.

SJH: PCR is not routinely performed on samples sent for OCP, but will be performed if relevant clinical details supplied as above, or on specific request.

Transport:
 
Transport as soon as practicable to RIE Microbiology or SJH Microbiology. Processed locally at the RIE, or referred to the Scottish Parasite Diagnostic & Reference Laboratory (SPDRL) at Glasgow Royal Infirmary.
Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection
 
Collect 5mls of liquid or 5g solid faeces in 20ml Universal stool container. Do not overfill container. Direct patients to information leaflet 'How should I collect and store a poo (stool) sample?' on NHS.uk website https://www.nhs.uk/common-health-questions/infections/how-should-i-collect-and-store-a-stool-faeces-sample/
How to request

Via Trak (For RIE/WGH select: "Faeces - Micro ADULT WGH/RIE only", for SJH select Faeces- Micro SJH, or "Faeces culture PAED" for children), via request form or via GP comms. Please state request for ova, cysts and parasites (OCP), symptoms, and travel history and suspected pathogen in the 'clinical details' field.

Availability

Tested daily Tuesday - Friday.

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

Please supply information on risk factors when requesting tests (e.g. foreign travel, MSM). Additionally, send clotted blood for amoebic serology if amoebiasis suspected. 

 
Volume - Child 1

​​ 5ml liquid or 5g of semi- solid / solid stool. Do not overfill.

Volume - Adult 1

5ml liquid or 5g of semi- solid / solid stool. Do not overfill.

Tissue (incl. Biopsy) for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful: in patients where disseminated TB is suspected.

Collect in a plain sterile universal container with no preservative added. Samples in formalin cannot be processed. Consider whether discussion with the lab is required prior to sampling to ensure transport and processing are timely and the appropriate tests are performed. Ideally collect specimens prior to antimicrobial therapy.

How to request

Via Trak ("Mycobacteria TB Ix - Tissue" then specify site. Alternatively order via request from. 

Availability

0900-1700 Mon - Fri.

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As much as possible.

Volume - Adult 1

As much as possible.

Additive - Adult 1

None

Tissue (incl. Biopsy) - Routine C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Collect in a plain sterile universal container with no preservative added.

Consider what other samples are required when sampling to send to other disciplines e.g. pathology, mycology, mycobacteriology.

Useful: in patients where bacterial tissue infection is suspected.  If this sample is debrided from an open wound in an outpatient setting e.g. diabetic foot clinic, results may reflect colonising flora, as oppose to a deeper sample taken under sterile conditions at biopsy or in theatre which hasn't been open to skin flora.  

How to request

GP order comms, or via Trak ("C&S - Tissue", then select specimen type "Tissue" and then update to appropriate body site.) Alternatively, order via request form.

Availability

24 hours (RIE). 0900-1700 (SJH)

Anticipated turnaround

Culture: up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist.

Volume - Child 1

As adult

Volume - Adult 1

As much as possible.

Additive - Adult 1

NONE

Bone for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful:

In patients where disseminated or bone TB is suspected.

Collect:

Collect in a plain sterile universal container with no preservative added.

How to request

Via Trak ("Mycobacteria TB Ix - Tissue" then specify site). Alternatively order via request form.

Availability

0900-1700 Mon - Fri. 

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As adult

Volume - Adult 1

As much as possbile

Additive - Adult 1

NONE

Bone - Routine C & S

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful:

In patients where there is suspicion of osteomyelitis or prosthetic joint infection. If this sample is debrided from an open wound in an outpatient setting, results may reflect colonising flora, as oppose to a deeper sample taken at biopsy or in theatre which hasn't been open to skin flora. 

Collect:

Use a plain sterile universal container with no preservative added.

How to request

Via Trak ("C&S - Tissue; then update site to appropriate body site e.g. Toe,2nd,left"). Alternatively order via request form. Please specify on request whether bone was sampled at biopsy/in theatre/in outpatient setting.

Availability

24 hours (RIE). 0900-1700 (SJH). 

Anticipated turnaround

Culture: up to 14 days.

What happens if the result is positive or abnormal

Telephoned or emailed by microbiologist.

General additional information

Culture only available.

Volume - Child 1

As adult

Volume - Adult 1

As much as possbile

Additive - Adult 1

NONE

Pleural fluid for TB

Transport arrangements

Transport as soon as is practicable.

Sample storage arrangements

If delay in transporting, store in the fridge (4-6°C).

Special instructions for collection

Useful:

In patients where there is suspicion of pleural (extra-pulmonary) TB.

How to request

Via Trak ("Mycobacteria TB Ix - Fluids" then specify "Fluid, pleural Mycobact"). Alternatively, order via  request form. 

Availability

0900-1700 Mon - Fri. Contact Duty Microbiologist for OOH microscopy requests.

Anticipated turnaround

Microscopy: 1 day. Culture: 4 - 6 weeks. 

What happens if the result is positive or abnormal

Telephoned by Microbiologist

General additional information

It should be noted that pleural or pericardial fluid are not very sensitive samples for the detection of M. tuberculosis, and that a concurrent pleural or pericardial biopsy taken with the fluid is more useful. A negative result on these fluids does not rule out the diagnosis.

For further information, please see Scottish Mycobacteria Reference Laboratory

Volume - Child 1

As adult

Volume - Adult 1

1 - 20 ml

Pleural Fluid - Routine C & S

Transport arrangements

Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store neat fluid in the fridge (4-6°C). Specimens in blood culture bottles should be stored at room temperature.

Special instructions for collection

Useful:

In patients where there is suspicion of empyema. Samples will not be processed for TB unless specifically requested (See Pleural Fluid for TB.)

Collection:

Aseptic technique essential. Send samples in universal container (1-20ml) and paired Blood Culture bottles, optimally filled with 8-10mls in each. There's no need to send more than 2 universal containers. If small volume obtained, send in a universal container only. 

How to request

Via Trak ("C&S - Fluids" then update site to "Fluid,pleural"). Use same Trak label for universal container and culture bottles. Alternatively, order on request form. 

Availability

Samples are processed 24 hours (RIE) and 0900-1700 (SJH). Samples taken outwith these hours will be processed the following morning.

Anticipated turnaround

Culture: up to 5 days.

What happens if the result is positive or abnormal

Telephoned by microbiologist

Container_Adult2
Volume - Child 1

As adult

Volume - Child 2

Up to 4 ml

Volume - Adult 1

1 - 20 ml

Volume - Adult 2

8 - 10 ml

Ascitic fluid - Routine M,C & S

Transport arrangements

Transport as soon as possible to nearest lab.

Sample storage arrangements

Store neat fluid in the fridge (4-6°C). Specimens in blood culture bottles should be stored at room temperature.

Special instructions for collection

Useful for:

Patients where there is a suspicion of bacterial peritonitis

 

Collection:

Aseptic technique essential. Send samples in universal container (1-20ml) and paired Blood Culture bottles, optimally filled with 8-10mls in each. Blood culture bottles increase the yield and decrease the likelihood of contamination. Fill the (red) anaerobic bottle first.

 

 

How to request

Via Trak ("C&S - Fluids" then update site to "Fluid,ascitic"). Use same Trak label for universal container and culture bottles. Alternatively, order on request form. 

Availability

RIE: 24 hours.

SJH: 0900-1700 Mon - Fri (0900-1600 Sat/Sun). Urgent samples taken out of hours at St Johns should be transported by taxi to the RIE Microbiology Labs for microscopy. Contact on call RIE Microbiology BMS (via switchboard) prior to sending sample to arrange.

Anticipated turnaround

Microscopy - 20 minutes from arrival in lab. Phone microbiology labs to alert sample is coming. Culture: up to 5 days. 

What happens if the result is positive or abnormal

Telephoned by Microbiologist.

Container_Adult2
Volume - Child 1

As adult

Volume - Adult 1

1 - 20 ml

Volume - Adult 2

8 - 10 ml

Antifungal Assay - Azole Antifungals

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at 4-6o C

Special instructions for collection

Consult Microbiologist before taking these samples.

Please note this must be a white cap blood tube as other types of tubes can affect the result due to the chelating agents contained within them.
How to request

Via TRAK or by request form

Availability

9 am - 5 pm Mon - Fri

Anticipated turnaround

16 days

What happens if the result is positive or abnormal

Results are reported as soon as they are phoned to us. Microbiology do not routinely phone these results.

General additional information

Sent to reference laboratory: http://www.mycologymanchester.org/services.php

For reference ranges and timing of samples see link below (pages 86 to 90):

Container_Adult1
Volume - Adult 1

5-9ml

Antifungal Assay - Flucytosine - 5FC

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at 4-6o C

Special instructions for collection

Must be arranged 24h in advance - contact Microbiologist for discussion of frequency and timing

How to request

Via TRAK or by yellow request form or GP order comms

Availability

9 am - 5 pm Mon - Fri

Anticipated turnaround

96 hours

What happens if the result is positive or abnormal

Telephoned by Microbiologist

General additional information

Contact medical staff for discussion of frequency and timing

Container_Adult1
Container_Child1
Volume - Child 1

>2 ml

Volume - Adult 1

5-9ml

Antibiotic Assay

Transport arrangements

Transport as soon as practicable.

Sample storage arrangements

If delay in transporting, store in fridge (4-6°C).

Special instructions for collection

To measure levels of other antimicrobials in serum e.g. antifungals, aminoglycosides, glycopeptides, anti-TB drugs, colistin (but not vancomycin, gentamicin and tobramycin which are processed locally.)  

Processed in reference laboratory (Bristol or Cardiff) after being sent from NHS Lothian.

Therapeutic drug monitoring for anti-TB medications requires specific sample types and processes depending on which drug and which laboratory the sample is going to. Please follow the guidelines here when planning to sample for TDM - "Guidance for therapeutic monitoring of TB medication".

How to request

Via TRAK (" e.g. Teicoplanin assay" and amend sample time to pre-dose, post-dose, or random, as relevant.) Alternatively, for antibiotics not listed on Trak, order via request form.

For anti-TB medication monitoring, please follow the guidelines carefully when requesting to ensure the right sample is taken at the right time, and labelled with the right details to be able to be processed. At the time of writing, TB TDM must be requested on separate bacteriology request forms. To assist with local processing of samples, please write "FOR REFERRED SEROLOGY", and "PLEASE DO NOT SPIN" on the form(s).

Availability

Samples will be posted from Mon - Thurs, please avoid taking samples on other days.

Anticipated turnaround

Up to 5 days.

What happens if the result is positive or abnormal

Result will appear on TRAK and if necessary phoned by a microbiologist.

General additional information

For more information about the tests available and their results interpretation please use:

NHS Severn Antimicrobial Reference Laboratory Guideline Ranges for TDM (2022-2023) 

Analytes | North Bristol NHS Trust (nbt.nhs.uk)

Container_Adult1
Container_Child1
Volume - Child 1

>0.2 ml

Additive - Child 1

None

Volume - Adult 1

1-10 ml

Blood Cultures for TB

Transport arrangements

Transport as soon as practicable

Sample storage arrangements

Store at room temp

Special instructions for collection

Bottles available from SMRL telephone 24(2) 6016

How to request

Via TRAK or by yellow request form or GP order comms

Availability

9 am - 5 pm Mon - Fri

Anticipated turnaround

95 days

What happens if the result is positive or abnormal

Telephoned by Microbiologist

General additional information

For further information, please see Scottish Mycobacteria Reference Laboratory

Container_Adult1
Container_Child1
Volume - Child 1

As adult

Volume - Adult 1

1-5 ml

Blood Cultures

Transport arrangements

Transport as soon as is practical. Best organism recovery is when collection of blood cultures to incubation is less than 4 hours. Can go in pneumatic tube system. (NB Mycobacterial Blood Cultures - in glass bottles cannot go in the pneumatic tube system)

Sample storage arrangements

Samples need to reach the lab incubators within four hours of being collected to be most useful. If there's a delay in transporting to the lab at RIE, store at room temperature. If out of hours at SJH ( 0900-1700 Mon to Fri, 0900-1600 Sat/Sun) store in the 37°C out of hours incubator. Don't refrigerate samples.

Special instructions for collection

Venous blood, arterial blood and sterile fluids can all be inoculated. Don't take off barcode stickers from the bottles.

See Blood culture skin preparation and aseptic sample collection procedure

Fill bottles optimally with 10mls of blood in each; overfilling bottles can lead to false positive results. Underfilling bottles reduces the chance of recovering bacteria, and false negatives. There is a direct relationship between blood volume and bacteria recovered, with approximately a 3% increase in yield per mL of blood cultured. If you haven't got enough blood, prioritise the aerobic (blue) bottle as most organisms we recover are aerobic.

Always sample a peripheral vein if possible, but if sampling an intravascular line when a line infection is suspected, sample all lumens and ensure labelled as cultures from a line. If inoculating blood culture bottles using a butterfly collection set and direct draw adapter cap, inoculate the aerobic bottle (blue) first and then the anaerobic bottle (red) so that any oxygen trapped in the tubing will not be transferred to the anaerobic bottle. If filling with a syringe, fill the anaerobic (red) bottle first.

How to request

Via Trak (Blood Culture Ix - ADULT ONLY). The same Trak number goes on each bottle of the set; you need to print two labels from the same request if labelling a pair of adult blood culture bottles. 

Availability

Blood cultures can be taken, and sent to the lab, at any time. 

Anticipated turnaround

Primary report after 48 hours of receipt in the lab. Total incubation 5 days. 

What happens if the result is positive or abnormal

Telephoned by microbiologist.

General additional information

This test is useful for:

Patients with fever or where there is a suspicion of serious infection. Identifies blood stream infections caused by bacteria or fungi. Can also be used for small volumes of sterile fluids (e.g. Ascites, joint fluids, peritoneal dialysis fluids etc.) to aid the recovery of fastidious organisms. Collect specimens before antimicrobial therapy where possible

To help with lab risk assessment, please highlight any history of foreign travel or animal exposure in the clinical details. 

Container_Adult1
Volume - Child 1

Up to 4 ml. Do not overfill.

Volume - Adult 1

Up to 10ml (8-10 ml is optimal). Do not overfill.

Porphyrins (faeces)

Sample storage arrangements

Protect sample from light.

Special instructions for collection

Send with blood and urine for quantitative porphyrin analysis in selected patients, or after a positive/equivocal screening result.

Anticipated turnaround

​28 days

General additional information

Samples from RIE, SJH and RHCYP will be sent via WGH.

Clinical testing strategy can be found here:

Further information for referring labs can be found here.

Container_Adult1
Container_Child1
Volume - Child 1

5g

Additive - Child 1

None

Volume - Adult 1

5g

Additive - Adult 1

None

CSF Xanthochromia

Transport arrangements

Sample must be hand delivered to the laboratory within 30 min of collection. The pneumatic tube system must not be used since this may result in the lysis of any red cells, which may cause a false positive result.

Sample storage arrangements

​Protect CSF sample for xanthochromia from light using aluminium foil or brown paper.

Special instructions for collection

If this procedure is not followed analysis is likely to be compromised

The CSF sample must be collected at least 12 hours after acute event.

The specimen for spectroscopy should be the least blood-stained fraction of CSF taken - usually the last and ideally at least the fourth.

The specimen should be protected from light.

A simultaneous blood specimen (brown cap tube) should be collected and sent, requesting total protein and bilirubin.

Avoid use of pneumatic tube system - hand deliver samples to the laboratory.

Anticipated turnaround

1 day

General additional information

Service available:

Mon - Fri: 09:00 - 16:15

Sat - Sun: 09:00 - 12:00

Container_Adult1
Volume - Adult 1

0.2 ml

Additive - Adult 1

None

Lactate (CSF)

Special instructions for collection
Send with paired blood sample. Take blood first.
Anticipated turnaround
​1 day
Container_Adult1
Container_Child1
Volume - Child 1
0.07 mL
Additive - Child 1
F-EDTA
Volume - Adult 1
0.07 mL
Additive - Adult 1
F-EDTA

Glucose (CSF)

Anticipated turnaround
1 day
General additional information
Glucose result should be interpreted with reference to simulatenous blood glucose level. Glucose levels in CSF are typically approximately 2/3 of the plasma glucose level.
Container_Adult1
Container_Child1
Volume - Child 1
0.07 mL
Additive - Child 1
F-EDTA
Volume - Adult 1
0.2 mL
Additive - Adult 1
F-EDTA

Biogenic amines (CSF)

Special instructions for collection
Requires special tubes and snap freezing into liquid nitrogen at the bedside.
How to request
By prior arrangement (at least 2 days in advance) with the Metabolic Biochemist only.

Asialotransferrin (CSF)

Special instructions for collection
Send nasal or ear discharge fluid, accompanied by a blood sample (brown cap tube).
Anticipated turnaround
14 days
General additional information
For identification of CSF rhinorrhoea or otorrhoea.
Container_Adult1
Volume - Adult 1
0.5 mL
Additive - Adult 1
None

Sodium (urine)

Availability

Mon - Sat

Anticipated turnaround

1 day

General additional information

Urine excretion reflects dietary intake. Interpretation depends on the clinical situation. A spot sodium of > 20 mmol/L is inappropriate in an adult with hyponatraemia. Paired blood and urine required for fractional sodium excretion.

Container_Adult2
Container_Child1
Volume - Child 1

1 mL

Additive - Child 1

None

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

None

Porphyrins (total, urine)

Special instructions for collection

Fresh sample essential. Protect sample from light by wrapping with aluminium foil.

Availability

For urgent analysis, please discuss with the laboratory.

Anticipated turnaround

8 days

General additional information

​Further information on porphyria testing can be found here including sample choice strategies.

Container_Adult1
Container_Child1
Volume - Child 1

10 mL

Additive - Child 1

None

Volume - Adult 1

10 mls

Additive - Adult 1

None

Porphobilinogen (urine)

Special instructions for collection

Sample should be collected at time of symptoms. Protect sample from light by wrapping with aluminium foil.

Availability

For urgent analysis, please discuss with the laboratory.

Anticipated turnaround

8 days

General additional information

For advice on management of acute porphyrias, see National Acute Porphyria Service (NAPS) website

This test is currently unaccredited to UKAS ISO 15189.

Container_Adult1
Container_Child1
Volume - Child 1

10 mL

Additive - Child 1

None

Volume - Adult 1

10 mls

Additive - Adult 1

None

Normetadrenaline (urine)

Anticipated turnaround

10 days

General additional information

Total of free and conjugated fraction assayed.

Various drugs are known to increase metadrenaline and normetadrenaline levels, please contact the laboratory for more information (0131 537 1899). Note that sulphasalazine may interfere with normetadrenaline levels and confirmatory testing may be required from an external lab.

Patient information sheet

Additive - Adult 1

Hydrochloric acid

Metadrenaline (urine)

Anticipated turnaround

10 days

General additional information

Total of free and conjugated fraction assayed.

Various drugs are known to increase metadrenaline and normetadrenaline levels, please contact the laboratory for more information (0131 537 1899). Note that sulphasalazine may interfere with normetadrenaline levels and confirmatory testing may be required from an external lab.

Patient information sheet -Sample Collection for Urine Metadrinaline

Additive - Adult 1

Hydrochloric acid

Drugs of abuse / Toxicology screen (urine)

Sample storage arrangements

Refrigerate if delay in delivery.

Availability

Normal working hours Monday-Friday only.

Anticipated turnaround

7 days

General additional information

Specific drug analysis. The following drugs are reported as positive when above the threshold level and negative when below:

Opiates: (Morphine, Codeine, 6-Mono-Acetyl Morphine (heroin metabolite), Dihydrocodeine, Oxycodone are reported when the group is positive)

Amphetamine

Cocaine metabolite (Benzoylecognine),

Methadone metabolite (EDDP),

Benozodiazepine group: Prescription drugs: Diazepam, Temazepam, Oxazepam, Nitrazepam, Nordiazepam - (diazepam/chlordiazepoxide metabolite) and 7amino-clonazepam (clonazepam metabolite)

Gabapentin.

Pregabalin.

Buprenorphine metabolite.

The following drugs are included in the specific drug analysis but will only be reported as positive when above the threshold level: MDMA (ecstacy), Metamphetamine,Tramadol, Oxycodone. Street benzodiazepines: Alprazolam and Etizolam will be reported when positive (separately from prescription benzodiazepines).

Diazepam, Nordiazepam, Temazepam, Oxazepam, Nitrazepam and Clonazepam are included in the benzodiaepine group

Heroin contains diacetyl morphine and acetyl codeine. Both of these are rapidly metabolised to 6-monoacetyl morphine and codeine respectively and the parent drugs are not detected in urine. Both 6-mono-acetyl morphine and codeine further metabolise to morphine. Finding 6-mono-acetyl morphine in urine is specific for heroin. Finding codeine without 6MAM is consistent with codeine administration. Finding morphine only is consistent with MST, heroin or codeine. Dihydrocodeine does not metabolise to either codeine or morphine. Oxycodone is compatible with Oxycodone, Oxynorm or Oxycontin.

Diazepam is metabolised to both Nordiazepam and Temazepam, both of which are further metabolised to Oxazepam. Finding Nordiazepam is consistent with either Diazepam or chlordiazepoxide.

Full history plus any prescribed drugs or administered in hospital required. Contact Duty Biochemist to discuss if other drugs suspected or required quickly.

Threshold levels:

Morphine, codeine, dihydrocodeine, oxycodone: 50µg/L

6MAM: 20µg/L

Amphetamine, metamphetamine, MDMA: 300µg/L

EDDP: 100µg/L

Cocaine metabolite: 100µg/L (Note: lower threshold implemented 11/03/24 in line with current guidance)

Benzodiazepine group: 5-20µg/L. Benzodiazepine group will be reported as positive when any of the prescription drugs listed are positive. This will not include street benzodiazepines, which will be reported separately.

Street benzodiazepines: Alprazolam and Etizolam: 5µg/L

Gabapentin, Tramadol, Pregabalin: 300µg/L

Norbuprenorphine: 10µg/L

Spiked sample:

Samples with high levels of EDDP, Buprenorphine or diazepam, with undetected methadone metabolite, norbuprenorphine or nordiazepam respectively are suggestive of spiked samples.

Container_Adult1
Container_Child1
Volume - Child 1

5 mL

Additive - Child 1

None

Volume - Adult 1

5 mls

Additive - Adult 1

None

Catecholamine profile (urine)

Transport arrangements

Sample must be received by the laboratory within 2 hours of collection.

Special instructions for collection
Paracetamol metabolites interfere - stop paracetamol for 24 hours before urine collection.
Availability
Please contact Duty Biochemist to arrange test.
Anticipated turnaround
14 days
General additional information
HMMA, HVA, adrenaline, dopamine, noradrenaline, free metadrenaline, free normetadrenaline.
Container_Child1
Volume - Child 1
10 mL
Additive - Child 1
None
Additive - Adult 1
HCl

Bence-Jones Protein (BJP, urine)

Special instructions for collection
Early morning uine (20 ml) required.
Availability
Analysed in a batch. Time to result will depend on the requirement for any follow-up analysis.
Anticipated turnaround
7 days
Container_Adult1
Volume - Adult 1
5.0 ml
Additive - Adult 1
None

Zinc

Transport arrangements

Zinc is unstable - please ensure arrival to the lab within 3 hours of collection.

Special instructions for collection

Avoid application of zinc or castor oil ointment to the skin as this may cause significant contamination.

Anticipated turnaround

28 days

General additional information

Copper and selenium can be performed on same sample.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

 

Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

0.60 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Volume - Adult 3

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Heparin (these must be non-gel tubes so 'Gel' should not appear on label)

Additive - Adult 3

Lithium-heparin (these must be non-gel tubes so 'Gel' should not appear on label)

Vitamin E

Sample storage arrangements

Protect sample from light.

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

Anticipated turnaround

​28 days

General additional information

Vitamin A & E measured on same sample.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

1.00 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

Lithium-heparin (non-gel)

Additive - Adult 2

Potassium EDTA

Vitamin D

Availability

Vitamin D retesting is not normally indicated within a year, and repeat requests in this time will typically be rejected.

Anticipated turnaround

3 days

General additional information

This is the preferred test for the investigation of vitamin D deficiency/osteomalacia.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

1.00 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Vitamin C

Transport arrangements

Send immediately to the laboratory marked for the attention of the Duty Biochemist.

How to request

Only by prior arrangement (24 hr in advance) with the Duty Biochemist.

Anticipated turnaround

​28 days

General additional information

​An equal volume or fresh metaphosphoric acid must be added by the laboratory within 4 hours of collection to preserve the sample prior to dispatch to Glasgow.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

2.00 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

2.0 ml

Volume - Adult 2

​2.0 ml

Additive - Adult 1

Lithium-heparin

Additive - Adult 2

Potassium EDTA

Vitamin B12

Anticipated turnaround

​4 days

General additional information

1 mL sufficient for B12 + folate + ferritin.

Vitamin B12 retesting is not normally indicated within 12 weeks, and repeat requests in this time will typically be rejected.

For further information on the potential for biotin interference please click here.

 

Container_Adult1
Container_Adult2
Container_Child1
Container_Child2
Volume - Child 1

1

Additive - Child 1

Lithium-heparin

Additive - Child 2

None

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

​None

Additive - Adult 2

Lithium-heparin

Vitamin B1

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

Anticipated turnaround

​28 days

General additional information

Also known as thiamine diphosphate.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

2.00 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

2.0 mL

Volume - Adult 2

​2.0 ml

Additive - Adult 1

Lithium-heparin (non gel)

Additive - Adult 2

Potassium EDTA

Vitamin A

Sample storage arrangements

Protect sample from light.

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

Anticipated turnaround

​28 days

General additional information

Vitamin A & E measured on same sample.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

1.00 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

Lithium-heparin (non-gel)

Additive - Adult 2

Potassium EDTA

Valproate

Anticipated turnaround
4 days
General additional information
Compliance check - of limited value for therapeutic monitoring. Also known as Epilim
Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1
0.07 ml
Additive - Child 1
Lithium-heparin
Volume - Adult 1
1.0 ml
Volume - Adult 2
​1.0 ml
Additive - Adult 1
None
Additive - Adult 2
Lithium-heparin

Urate

Special instructions for collection
If patient is on rasburicase collect samples on ice and send immediately to laboratory.
Anticipated turnaround
1 day
Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1
0.07 ml
Additive - Child 1
Lithium-heparin
Volume - Adult 1
0.1 ml
Volume - Adult 2
​0.1 ml
Additive - Adult 1
None
Additive - Adult 2
Lithium-heparin

TSH-receptor antibodies (TRAbs)

Special instructions for collection

DO NOT USE LITHIUM HEPARIN (ORANGE CAP) TUBES

Availability

Normal working hours only.

Anticipated turnaround

6 days

General additional information

For investigation of hyperthyroidism/eye disease only. Please note half-life is 6 weeks.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Child1
Volume - Child 1

1.00 ml

Additive - Child 1

None

Volume - Adult 1

1.0 ml

Additive - Adult 1

None

Troponin T (high sensitivity)

Special instructions for collection

A single sample should be taken at least 12 h post event.

Anticipated turnaround

2 hours

General additional information

​Note change in units to ng/L with high sensitive troponin I.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.60 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Tri-iodothyronine, free (free T3)

Anticipated turnaround

4 days

General additional information

See notes under Thyroid investigations

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.40 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Triglycerides

Special instructions for collection

Fasting sample essential.

Anticipated turnaround

1 day

General additional information

See current clinical guidelines.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.60 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Tobramycin

Transport arrangements

Send as soon as possible

Anticipated turnaround
12 hours
General additional information

Levels from RIE are now analysed at WGH

Container_Adult1
Container_Child1
Volume - Child 1
​0.07 mL
Additive - Child 1
​Lithium heparin
Volume - Adult 1
0.5 ml
Additive - Adult 1
None

Thyroxine, free (free T4, FT4)

Anticipated turnaround

4 days

General additional information

See notes under Thyroid investigations

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.6 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Thyroid stimulating hormone (TSH)

Anticipated turnaround

4 days

General additional information

See notes under Thyroid investigations

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.60 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.5 ml

Volume - Adult 2

​0.5 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Thyroid investigations (TFTs)

Anticipated turnaround
4 days
General additional information
Please indicate if patient is on T4 or anti-thyroid medication. In acutely ill patients abnormal thyroid function tests are frequently found. These revert to normal on resolution of illness. Do not routinely request tests for hospital inpatients unless there is a high clinical suspicion of thyroid disease. See individual entries for TSH, total T3, TRAB, thyroglobulin and calcitonin.
Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1
0.6
Additive - Child 1
Lithium-heparin
Volume - Adult 1
0.6 ml
Volume - Adult 2
​0.6 ml
Additive - Adult 1
None
Additive - Adult 2
Lithium-heparin

Thyroglobulin

Transport arrangements

​Sample should be received promptly by the laboratory. If sample will not be received by the referral laboratory (RIE) within 3 days of collection, separated serum must be frozen prior to sending.

Anticipated turnaround

7 days for RIE, 28 days for Birmingham

General additional information

Thyroglobulin testing is mainly for monitoring patients with differentiated thyroid cancer. All requests will be processed for thyroglobulin and thryoglobulin antibody to exclude assay interference. Samples may be referred to Birmingham for confirmatory testing by a different method.

For further information on the potential for biotin interference please click here.

Container_Adult1
Additive - Adult 1

None

Thiopentone

How to request
Contact Duty Biochemist to discuss.
Anticipated turnaround

​Analysed Monday-Friday by Cardiff (by arrangement only).

Next day if courier used and arranged as emergency.

Container_Adult1
Volume - Adult 1
5.0 ml
Additive - Adult 1
None

Theophylline

Special instructions for collection

Collect blood prior to next dose. Time to steady state is 48 - 72 h.

Anticipated turnaround

1 day

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.20 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Testosterone

Special instructions for collection

Collect blood from male patients preferably in morning (8-11 am) as levels fall by approximately 20% in afternoon. In females collect during days 1 - 5 of cycle, where possible.

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

See also free androgen index and calculated free testosterone.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.4 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Tacrolimus

Special instructions for collection

Collect sample just before next dose.

Availability

Samples analysed in batches twice per day Mon – Fri.

Samples received before 10am will normally be reported by 2pm.

Samples received before 2pm will normally be reported same day.

 

Samples analysed on a Sat morning by prior arrangement only with the Duty Biochemist and must be received by 10am.

Anticipated turnaround

3 days

General additional information

Therapeutic range varies with time post-transplant.

Container_Adult1
Container_Child1
Volume - Child 1

0.5 ml

Additive - Child 1

Potassium EDTA

Volume - Adult 1

1.0 ml

Additive - Adult 1

Potassium EDTA

Short synacthen test (SST)

Special instructions for collection

Administer 0.25 mg Synacthen i.m. or i.v. Collect blood for cortisol at time 0 and 30 min and send to the laboratory clearly identifing the samples. Send request form orders together on a single form. TRAK orders can be sent separately.

Anticipated turnaround

​1 day

General additional information

ADULT PROTOCOL

Container_Adult1
Container_Adult2
Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Sex hormone binding globulin (SHBG)

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Primarily used to calculate the free androgen index in females, and calculated free testosterone in males.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

1.00 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Selenium

Anticipated turnaround

​28 days

General additional information

Zinc and copper can be done on same sample.

Samples sent to Scottish Trace Element and Micronutrient Reference Laboratory.

Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

0.6 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Volume - Adult 3

1.0 ml

Additive - Adult 1

Lithium-heparin (these must be non-gel tubes so 'Gel' should not appear on label)

Additive - Adult 2

None

Additive - Adult 3

Heparin (these must be non-gel tubes so 'Gel' should not appear on label)

Salicylate

Anticipated turnaround

1 day

General additional information

Potential toxicity in children >350 mg/L

Container_Adult1
Container_Adult2
Container_Child1
Container_Child2
Volume - Child 1

0.1 ml

Volume - Child 2

​0.1 ml

Additive - Child 1

Potassium EDTA

Additive - Child 2

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

Lithium-heparin

Additive - Adult 2

None

Renin

Transport arrangements

Sample should be received in the laboratory on the same day of collection.

Sample storage arrangements

Do not refrigerate samples.

Special instructions for collection

Please note any relevant drug history.

Anticipated turnaround

10 days

Static information/disclaimer

General additional information

See entry for aldo:renin ratio for investigation of possible primary aldosteronism.
A single red cap (EDTA) tube filled to the line (2.7 mL) is sufficient for both renin and aldosterone tests.

Container_Adult1
Container_Child1
Volume - Child 1

2.0 ml

Additive - Child 1

Potassium EDTA

Volume - Adult 1

2.7 ml

Additive - Adult 1

Potassium EDTA

Protein electrophoresis

Availability

Analysed in a batch. Time to result will depend on the requirement for any follow-up analysis.

Anticipated turnaround

7 days

General additional information

Serum Protein Electrophoresis retesting is not normally indicated within two weeks, and repeat requests in this time will typically be rejected.

Interferences: Therapeutic monoclonal antibodies: daratumumab and elotuzumab may appear as small M-protein up to 1 g/L on protein electrophoresis and immunofixation. Current methods cannot distinguish these from endogenous paraproteins.

This test is currently unaccredited to UKAS ISO 15189.

Container_Adult1
Container_Child1
Volume - Child 1

​1.0 ml

Volume - Adult 1

1.0 ml

Additive - Adult 1

None

Prostate specific antigen (PSA)

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Age-related reference ranges. Transient increases occur in prostatitis and after catheterisation.

Container_Adult1
Volume - Adult 1

0.2 ml

Additive - Adult 1

None

Prolactin

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Raised in patients on some psychoactive drugs, in primary hypothyroidism, pregnancy, and with stressful venepuncture.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.6 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Progesterone

Special instructions for collection

Collect at days 18 - 24 of a 28 day cycle, or 7 - 10 days before next expected menses.

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Repeat in 3 cycles, if required, to allow for variation between cycles.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

2.0 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Potassium

Sample storage arrangements

Samples should be kept at room temperature, especially if there is a delay in transport. Potassium leaks from cells if samples are chilled.

Anticipated turnaround

1 day

General additional information

Serum results are on average 0.3 mmol/L higher than plasma or whole blood results, although this varies between samples.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.07 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Phosphate

Special instructions for collection

Fasting sample preferred.

Anticipated turnaround

1 day

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.07 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Phenytoin

Special instructions for collection

Time of sample collection in relation to dose not crucial due to long half life of phenytoin in plasma. Time to reach steady state is 5-14 days after initiation of therapy or dose adjustment.

Anticipated turnaround

1 day

General additional information
An Adjusted phenytoin level will be calculated where serum albumin levels are less than 40g/L. This is because as albumin levels fall the proportion of active “free” drug is increased, and the reported level therefore requires adjustment to take this effect into account. This adjusted level is a more accurate reflection of pharmacologically active phenytoin than the measured level if albumin is less than 40g/L.
Other factors may also affect phenytoin binding – and caution should be used when interpreting levels in the following patient groups:
- Patients with impaired renal function (seek pharmacy advice where creatinine clearance is less than 25ml/min).
- Patients requiring renal replacement therapy need their adjusted phenytoin levels further corrected (seek advice from a specialist clinical pharmacist).
- Patients prescribed concomitant highly protein-bound medicines (eg sodium valproate).
- Pregnant women (seek specialist advice).
- Children (seek specialist advice).
Other factors to consider when interpreting phenytoin levels include:
- The time the sample was taken in relation to the dose (for routine sampling a trough level is recommended).
- Time for phenytoin levels to reach steady-state (takes 5 to 14 days for full effect of dose changes).
- Route of administration.
Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.07 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Phenylalanine

Special instructions for collection

Fill capillary tube as full as possible.

Anticipated turnaround

9 days

Container_Adult1
Container_Child1
Volume - Child 1

0.30 ml

Additive - Child 1

Lithium-heparin

Additive - Adult 1

Lithium-heparin

Parathyroid hormone (PTH)

Transport arrangements

Sample must be received by the laboratory within 48 h.

Availability

Normal working hours only.

Anticipated turnaround

5 days

General additional information

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Child1
Volume - Child 1

1.0 ml

Additive - Child 1

Potassium EDTA

Volume - Adult 1

1.0 mL

Additive - Adult 1

Potassium EDTA

Paracetamol

Special instructions for collection

Do not sample before 4 h following ingestion.

How to request

Prior arrangement essential to alert Emergency Laboratory.

Anticipated turnaround

1 day

General additional information

High levels of paracetamol and N-acetylcysteine may cause falsely low results in other assays including creatinine.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.10 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Oestradiol

Special instructions for collection

In menstruating patients, collect sample during days 1 - 5 of cycle.

Availability

Normal working hours only.

Anticipated turnaround

2 days

General additional information

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.6 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

β2-Microglobulin

Anticipated turnaround

​7 days

General additional information

Note change in laboratory and reference range from 26/02/24 onwards.

This test is currently unaccredited to UKAS ISO15189.

Container_Adult1
Volume - Adult 1

1.0 mL

Additive - Adult 1

None

Methotrexate

Special instructions for collection

Samples must be protected from light.

How to request

Special arrangements - contact laboratory.

Anticipated turnaround

​1 day

Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

0.1 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Volume - Adult 3

1 mL

Additive - Adult 1

None

Additive - Adult 2

Potassium EDTA

Additive - Adult 3

Lithium heparin

Methanol

How to request

In the first instance, we strongly recommend phoning UK NPIS (available 24/7) if toxic alcohol poisoning is suspected. UK NPIS will be able to provide clinical guidance, including whether testing is appropriate. All requests must then be arranged through the Duty Biochemist (or on-call biochemist, see availability below).

Availability

This is not an automated test and there is very limited availability out-of-hours. All requests must be discussed with the Duty Biochemist. Out-of-hours (weekdays after 7.30pm, or at weekends) please contact the on-call biochemist through switchboard.

Anticipated turnaround

1 day

Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

​1 ml

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Volume - Adult 3

​1.0 ml

Additive - Adult 1

Lithium-heparin

Additive - Adult 2

None

Methaemoglobin

Transport arrangements

​Sample must be received by lab within one hour. Samples on ice must arrive within 4 hours.

Sample storage arrangements

​Transport to lab on ice, must be analysed within 4 hours of collection.

Special instructions for collection

Fill tube to top.

Anticipated turnaround

1 day

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

​1.0 ml

Volume - Adult 1

1.0 ml

Additive - Adult 1

Lithium-heparin

Manganese

Special instructions for collection

Fasting sample or 8 hours after supplementation is recommended.

Anticipated turnaround

​28 days

General additional information
Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.30 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

1.0 ml

Additive - Adult 1

Lithium Heparin (these must be non-gel tubes so 'Gel' should not appear on label) 

Additive - Adult 2

Heparin (these must be non-gel tubes so 'Gel' should not appear on label)

Lysosomal enzymes

Anticipated turnaround

42 days

General additional information

Contact the Metabolic Biochemist to discuss specific requirements.

For further information, please refer to:

 

 

Lysosomal enzyme profile includes:

a-Galactosidase

a-Glucosidase

a-Mannosidase

Acid Esterase

Arylsulphatase A

b-Galactosidase

b-Glucosidase

a-Mannosidase

Galactocerebrosidase

Hexosaminidase A

Total Hexosaminidase

Sphingomyelinase

Container_Child1
Volume - Child 1

5 mls

Additive - Child 1

Potassium EDTA

Luteinising hormone (LH)

Special instructions for collection

In menstruating patients, collect sample during days 1 - 5 of cycle.

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Post-menopausal' is defined as at least 1 yr amenorrhoea in women > 50 yrs.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

1.4 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Lead

Special instructions for collection

Mix sample well.

Anticipated turnaround

​28 days

General additional information
Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Container_Child2
Volume - Child 1

0.3 mL

Volume - Child 2

1 mL

Additive - Child 1

Potassium EDTA

Additive - Child 2

Lithium heparin (non gel)

Volume - Adult 1

1.0 mL

Volume - Adult 2

1.0 mL

Volume - Adult 3

1.0 ml

Additive - Adult 1

Potassium EDTA

Additive - Adult 2

Lithium heparin (these must be non-gel tubes so 'Gel' should not appear on label) 

Additive - Adult 3

Heparin (these must be non-gel tubes so 'Gel' should not appear on label) 

Lactate

Special instructions for collection

No vigorous exercise prior to venepuncture. Avoid venous stasis - if using a tourniquet, release and wait >60 s before drawing blood.

Anticipated turnaround

1 day

Container_Adult1
Container_Child1
Volume - Child 1

0.1 ml

Additive - Child 1

F-EDTA

Volume - Adult 1

0.1 ml

Additive - Adult 1

F-EDTA

Iron

Anticipated turnaround

1 day

General additional information

Primarily indicated in the investigation of suspected iron overload, along with transferrin. In suspected iron deficiency request ferritin.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.10 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Insulin

Transport arrangements

Ice not required for transport, but blood must be separated and serum frozen within 4 h of collection.

Special instructions for collection

Send separate tube (yellow cap) for simultaneous glucose measurement. Avoid haemolysis.

Anticipated turnaround

7 days

General additional information
Interpretation of insulin results
A reference range for insulin is not provided because in most circumstances when insulin is requested it is not useful to compare the result with the range found in a normal healthy population.
Investigation of hypoglycaemia
Glucose and insulin should be measured during hypoglycaemia (Whipple’s triad should be met: symptoms, signs, or both consistent with hypoglycemia, a low plasma glucose concentration, and resolution of those symptoms or signs after the plasma glucose concentration is raised). C-peptide assists in the further differential diagnosis. Low insulin and C-peptide results (typically <14pmol/L & <50pmol/L, respectively) reflect the normal physiological response to hypoglycaemia and are normally associated with raised free fatty acid and β-hydroxybutyrate results. A measurable insulin and C-peptide in the face of hypoglycaemia suggests hyperinsulinism, and free fatty acids and β-hydroxybutyrate will not be raised. A measurable insulin paired with a low C-peptide suggests the presence of insulin from an exogenous source. The Abbott Architect method has been shown to cross-react with commonly prescribed insulin preparations (Actrapid, Humulin S, Insulatard, Humulin I, Humulin M3, NovoRapid, Apidra, Humalog, Levemir, Lantus) however the result reported is unlikely to be an accurate quantification of drug concentration.
Prolonged observed fast may be required to demonstrate hyperinsulinaemic hypoglycaemia: this should handled by Endocrine specialists.
Insulin resistance
The local insulin assay has not been validated for use in assessment of insulin resistance/sensitivity and the laboratory cannot provide ranges for these scenarios.
Potential Interferences

Insulin levels are affected by haemolysis. Rarely, antibodies to insulin may interfere with its measurement and may be pathological (Insulin autoimmune syndrome).

For further information on the potential for biotin interference please click here.

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Container_Child1
Volume - Child 1

0.40 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

7α-Hydroxycholestenone

Sample storage arrangements

Sample should be separated and frozen within 24 h of collection.

Special instructions for collection

Fasting sample preferred.

Availability

This assay is not currently available. 

Static information/disclaimer

​This test is currently unaccredited to ISO 15189

General additional information

Marker of bile acid malabsorption.

Container_Adult1
Container_Child1
Volume - Child 1

4 mL

Additive - Child 1

None

Volume - Adult 1

4 mL

Additive - Adult 1

None

Hydroxybutyrate

Availability

Daily Mon - Fri

Anticipated turnaround

5 days

General additional information

If only hydroxybutyrate is required, an orange cap sample is acceptable. If hydroxybutyrate and free fatty acids is required, a yellow cap sample is necessary as FFA cannot be measured on an orange tube.

Container_Adult1
Container_Child1
Volume - Child 1

0.2 ml

Additive - Child 1

Fluoride-oxalate

Volume - Adult 1

​0.2 mL

Additive - Adult 1

Fluoride-oxalate

Human chorionic gonadotrophin (hCG)

Anticipated turnaround

​4 days

General additional information

Requested for pregnancy testing or as a tumour marker.

Postmenopausal levels <10 U/L

Males and pre-menopausal females <5 U/L

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.6 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

Lithium-heparin

Homocysteine

Transport arrangements

Transport rapidly to laboratory.

Anticipated turnaround

16 days

General additional information

​Used for the investigation of homocystinuria and cobalamin defects. Not to be used for cardiovascular risk assessment.

Container_Adult1
Container_Adult2
Container_Child1
Container_Child2
Volume - Child 1

2.00 ml

Additive - Child 1

Potassium EDTA

Additive - Child 2

Lithium-heparin

Volume - Adult 1

2.0 ml

Volume - Adult 2

​2.0 ml

Additive - Adult 1

Potassium EDTA

Additive - Adult 2

Lithium-heparin

HbA1c

Availability

Normal working hours only.

Anticipated turnaround

4 days

What happens if the result is positive or abnormal

​HbA1c is generally used to monitor glycaemic control in Diabetes.

HbA1c is now available for Diagnosis of Diabetes Mellitus. This is not a first-line test and should only be used when guideline criteria are met. Interpretation of HbA1c for the diagnosis of Diabetes is:

HbA1c <41 mmol/mol is in the normal range.

HbA1c 42-47 mmol/mol is in the high risk range

HbA1c =>48 mmol/mol is diagnostic of diabetes mellitus

General additional information

Please see current clinical guidelines. Also know as glycated haemoglobin.

Container_Adult1
Container_Child1
Volume - Child 1

0.05 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Additive - Adult 1

Potassium EDTA

Gut hormone screen

Transport arrangements

Sample must be collected on ice and arrive in the laboratory within 15 minutes.

Special instructions for collection

Please collect and send 2x red/pink cap (EDTA) tubes. Fasting sample required. Patients should not be on omeprazole or other PPIs.

Availability

Please arrange with the Duty Endocrine Biochemist prior to sample collection.

Anticipated turnaround

​35 days

General additional information

Gut hormone screen includes gastrin, glucagon, pancreatic peptide (PP), somatostatin, vasoactive intestinal peptide (VIP) and chromogranins A & B.

Container_Adult1
Volume - Adult 1

4.0 ml

Additive - Adult 1

None (trasylol no longer required)

Growth hormone (GH)

Availability

Normal working hours only.

Anticipated turnaround

6 days

General additional information

A single GH measurement is of limited value. Normally only done as part of a dynamic function test.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.6 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Glucose tolerance test

Special instructions for collection

This should be performed in the morning after a fast of 8 - 14 h. Samples for glucose analysis should be collected before and 2 h after the ingestion of 75 g glucose.

Anticipated turnaround

​1 day

Container_Adult1
Additive - Adult 1

F-EDTA

Glucose

Special instructions for collection

Patient should be fasting.

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

​Fasting glucose >7.0 µmol/L is diagnostic of Diabetes

Fasting glucose 6.1-6.9 µmol/L is at high risk of diabetes and further investigation is required

Random glucose >11.1 is diagnostic of Diabetes

Random glucose 7.8-11.0 µmol/L is at high risk of diabetes and further investigation is required

Refer to guidelines on the Diagnosis of diabetes mellitus in asymptomatic adults.

Gestational Diabetes - refer to local guidelines

General additional information

Please see current clinical guidelines.

Container_Adult1
Container_Child1
Volume - Child 1

0.07 ml

Additive - Child 1

F-EDTA

Volume - Adult 1

0.2 ml

Additive - Adult 1

F-EDTA

Gastrin

Transport arrangements

Sample must be collected on ice and arrive in the laboratory within 15 minutes.

Special instructions for collection

Patient should be fasting.

How to request

Unstable hormone: notify Duty Endocrine Biochemist in advance.

Anticipated turnaround

35 days

General additional information

Haemolysed samples are unsuitable for analysis.

Container_Adult1
Container_Child1
Volume - Child 1

4 ml

Additive - Child 1

None (trasylol no longer required)

Volume - Adult 1

4.0 ml

Additive - Adult 1

None (trasylol no longer required)

Blood Gases (H+, pCO2, pO2, bicarbonate, Base Excess, Lactate

Transport arrangements

Avoid use of air tube.

Special instructions for collection

Expel air bubbles from the syringe and mix by gentle inversion. Remove needle and cap syringe. Samples should reach lab within 30 minutes and not be iced but kept at room temperature.

Anticipated turnaround

2 hours

General additional information

Point-of-Care testing for blood gases includes all of the above plus the following:

Sodium: 135 - 145 mmol/L

Potassium: 3.6-5.0 mmol/L

Chloride: 95-107 mmol/L

Ionised Calcium: 1.15-1.29 mmol/L

Anion gap: 10 - 20 mmol/L

Glucose (blood): mmol/L

Bilirubin: 0 - 21 µmol/L

Oxyhaemoglobin: 94 - 98 %

Carboxyhaemoglobin: 0 - 1.5 %

Methaemoglobin: 0 - 1.5 %

Lactate: Possible interference from ethylene glycol on lactate (Point-of-care blood gas analyser). Confirm unexpectedly high results by sending plasma lactate sample to Biochemistry laboratory.

 

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Container_Child1
Volume - Child 1

​65 µL

Additive - Child 1

Capillary must be heparinised.

Volume - Adult 1

Full

Additive - Adult 1

Heparin

FSH (follicle stimulating hormone)

Special instructions for collection

In menstruating patients, collect sample during days 1 - 5 of cycle.

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Post-menopausal' is defined as at least 1 yr amenorrhoea in women > 50 yrs.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

1.4 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Free fatty acids

Availability

Daily Mon - Fri

Anticipated turnaround

5 days

General additional information

​For investigation of hypoglycaemia.

Container_Adult1
Container_Child1
Volume - Child 1

0.20 ml

Additive - Child 1

Fluoride-oxalate

Volume - Adult 1

​0.2 mL

Free androgen index (FAI)

Availability

Normal working hours only.

Anticipated turnaround

5 days

General additional information

FAI = 100 [testosterone] / [SHBG] See individual entries for testosterone and SHBG. See Calculated Free Testosterone for males.

Container_Adult1
Container_Adult2
Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 2

Lithium-heparin

Ferritin

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.20 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Ethylene glycol

How to request

In the first instance, we strongly recommend phoning UK NPIS (available 24/7) if toxic alcohol poisoning is suspected. UK NPIS will be able to provide clinical guidance, including whether testing is appropriate. All requests must then be arranged through the Duty Biochemist (or on-call biochemist, see availability below).

Availability

This is not an automated test and there is very limited availability out-of-hours. All requests must be discussed with the Duty Biochemist. Out-of-hours (weekdays after 7.30pm, or at weekends) please contact the on-call biochemist through switchboard.

Anticipated turnaround

1 day

Container_Adult1
Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

​1 ml

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Volume - Adult 3

​1.0 ml

Additive - Adult 1

Lithium-heparin

Additive - Adult 2

None

Estimated glomerular filtration rate (eGFR)

Anticipated turnaround

​1 day

General additional information

Calculated values using Modification of Diet in Renal Disease (MDRD) equation:

eGFR (mL/min/1.73m2) = 175 x (serum creatinine in µmol/l × 0.011312)-1.154 × (age)-0.203 × (0.742 if female)

The calculation is not valid in children.

See www.renal.org for more information.

Container_Adult1
Container_Adult2
Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Disopyramide

How to request

​Collect sample prior to next dose.

Anticipated turnaround

​14 days

General additional information

Active metabolite desalkyldisopyramide has the same therapeutic range as parent drug.

Container_Child1
Volume - Child 1

1.0 ml

Additive - Child 1

Lithium-heparin

Digoxin

Special instructions for collection

Digoxin concentration should be measured at least 6 hours post-ingestion. DigiFab interferes with measurement of digoxin.

Anticipated turnaround

1 day

General additional information

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Child1
Volume - Child 1

0.20 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 mL

Additive - Adult 1

None

Cryoglobulin

Special instructions for collection

Patients should be fasted and collections should be performed Monday-Thursday. If a Friday collection is unavoidable please contact the duty biochemist at the Western General Hospital laboratory to discuss (ext 31899). Sample collection tubes and transport flask are collected from the laboratory immediately prior to sampling. At Western Ganeral Hospital the flask must be retruned to the laboratory within 30 minutes. At the Royal Infirmary of Edinburgh or St John's Hospital the ward is responsible for booking a taxi to deliver the samples (in the transport flask) to the Western General Hospital laboratory immediately following sampling. An instruction sheet will be provided.

How to request

Prior arrangement with the Duty Biochemist is essential. If samples are to be taken at the Western General Hospital or St John's Hospital please contact 0131 5371899 (ext 31899). If samples are to be collected at the Royal Infirmary of Edinburgh please contact 0131 242 6879 (ext 26879).

Anticipated turnaround

8 - 14 days

General additional information

Test detects both cryglobulin and cryofibrinogen.

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Container_Adult2
Volume - Adult 1

4.0 ml

Volume - Adult 2

​2.0 ml

Additive - Adult 1

Sample collection tubes are provided by the laboratory in the 37C transport flask

Additive - Adult 2

Potassium EDTA x2 sample collection tubes are provided by the laboratory in the 37C transport flask

Creatinine

Anticipated turnaround

1 day

General additional information

Also, see entry for estimated GFR.

High levels of paracetamol and N-acetylcysteine may cause falsely low results in other assays including creatinine.

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.1 mL

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.1 mL

Volume - Adult 2

​0.1 mL

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

C-peptide

Transport arrangements

Samples should arrive with the laboratory on the same day as collection (C-peptide is stable for 8 hours at room temperature and 48 hours if refrigerated).

Anticipated turnaround

7 days

General additional information
Interpretation of C-peptide results
A reference range for C-peptide is not provided because in most circumstances when C-peptide is requested it is not useful to compare the result with the range found in a normal healthy population.
C-peptide levels reflect output of insulin from pancreatic β-cells and are extensively used in research however translation into clinical practice is ongoing. The use of C-peptide in selected patient groups is described below. Please note that C-peptide is excreted in the urine and therefore renal failure will increase the concentration of C-peptide in blood.
Investigation of hypoglycaemia
Paired measurement of glucose and insulin are required for the investigation of hypoglycaemia. C-peptide is only useful in the differential diagnosis of proven hyperinsulinaemic hypoglycaemia. See the website entry for insulin for further details.
Type 1 diabetic patients
Measurement of C-peptide may be used as a screening test in patients with a presumptive diagnosis in patients 3+ years following diagnosis. It should NOT be measured during an episode of DKA due to possible toxicity towards pancreatic cells, or within 3 years of presentation due to “honeymoon period” preservation of β-cell function. For full guidance on requesting and interpretation see the Diabetes Diagnostic pathway on the Edinburgh Centre for Endocrinology and Diabetes (ECED) website at www.edinburghdiabetes.com/diabetes-protocols.
Type 2 diabetic patients

Measurement of C-peptide is NOT currently advised to inform which treatment is most appropriate in Type 2 diabetic patients (eg insulin versus oral hypoglycaemics). This is likely to form the focus of future work.

For further information on the potential for biotin interference please click here.

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Container_Child1
Volume - Child 1

​0.50 ml

Additive - Child 1

​Lithium Heparin

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Cortisol

Special instructions for collection

Results affected if patient stressed. Prednisone and prednisolone interfere with the test.

Availability

Normal working hours only

Anticipated turnaround

4 days

General additional information

See also entries for dexamethasone and Synacthen tests.

For further information on the potential for biotin interference please click here.

 

Container_Adult1
Container_Child1
Volume - Child 1

minimum 0.4 mL

Volume - Adult 1

0.5 ml

Additive - Adult 1

None

Copper

Anticipated turnaround

28 days

General additional information
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Container_Adult2
Container_Adult3
Container_Child1
Volume - Child 1

​0.60 ml

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

Lithium Heparin (these must be non-gel tubes so 'Gel' should not appear on label) 

Additive - Adult 2

None

Additive - Adult 3

Heparin (these must be non-gel tubes so 'Gel' should not appear on label)

Ciclosporin

Special instructions for collection

Collect just before next dose.

Availability

Samples analysed in batches twice per day Mon – Fri.

Samples received before 10am will normally be reported by 2pm.

Samples received before 2pm will normally be reported same day.

 

Samples analysed on a Sat morning by prior arrangement only with the Duty Biochemist and must be received by 10am.

Anticipated turnaround

​3 days

General additional information

Therapeutic range varies with time post-transplant.

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Volume - Child 1

​0.50 ml

Additive - Child 1

​EDTA

Volume - Adult 1

1.0 ml

Additive - Adult 1

Potassium EDTA

Cholinesterase

How to request

Performed infrequently in small batches. If required more urgently, please contact the Duty Biochemist.

Availability

Batched and run approximately every month.

Anticipated turnaround

28 days

General additional information

Why measure ‘Cholinesterase’?

 
Cholinesterase activity and phenotype studies in a patient can be used to predict the degree of potential post-operative paralysis following the use of the short reacting muscle relaxant suxamethonium or mivacurium.
It can also be used as a monitor of exposure to organic phosphorus compounds in the agricultural and chemical industries.
 
The laboratory measures the enzyme activity in the patient’s blood and also determines the biochemical phenotype, which is an indicator of the enzymes ability to break down the drug. Both factors are involved in determining that patient’s risk of paralysis. Low enzyme activity may be related to the phenotype, or can occur in a patient with a normal (Usual) phenotype if there are any secondary factors (see list below).
The phenotype tells you about the behaviour of the enzyme whereas a genotype tells you about the particular mutations that the patient has inherited. A phenotype can be made up of more than one genotype.
 
Who to measure ‘Cholinesterase’ in
Measurement of cholinesterase is indicated in anyone who has already experienced an apnoea in theatre, or in first degree relatives of patients who have been found to have an abnormality in enzyme activity or phenotype.
Sample collection
Samples should be collected in to a brown serum tube. If samples are being sent from an external laboratory, separate and send the serum fraction.
If a patient has experienced an apnoea you should wait at least 24 hours before collecting a sample in order to ensure that there is no drug present in the sample as this can cause erroneous results in the assay.
What do the results mean?
Enzyme activities that are reported as being lower than expected for phenotype could be due to the following factors;
· Birth : 50% level of adults (up to 6 weeks). From 6 wks to 6 yrs a steady rise to levels greater than adults, followed by a fall to adult levels by puberty.
· In pregnancy, levels fall by approx 30%, returning to normal about 6 wks post partum.
· Acute hepatitis & chronic hepatitis
· Cirrhosis and metastases in the liver
· Acute Infections
· Pulmonary embolism
· Muscular dystrophy
· Following surgical procedures
· MI
· Chronic renal disease
· Organic phosphorus insecticides
· Oral Contraceptives – after 3 months of taking a variety of combined OCPs there was a decrease in the mean cholinesterase activity of 20%
· Competitive cholinesterase inhibitors
 
If any of these conditions exist and are transient, enzyme levels should be checked on recovery.
 
The Butyrylcholinesterase phenotype is determined in an autosomal dominant manner; one allele inherited is from each parent and has an equal effect such that the presence of both alleles together produces an intermediate effect. If hydrolysis in the assay occurs in a ‘normal’ manner, the phenotype of the patient is ‘Usual’ and risk of paralysis is extremely rare. If however hydrolysis is significantly reduced (representing a high risk of muscle paralysis) the phenotype is ‘Atypical’ and paralysis of two or more hours may be experienced. Some patients will have phenotypes that are intermediate between these and will be represented on the report by two different letters, e.g. UA, AK, AJ. The risk associated with each phenotype will be provided on the report and the laboratory will advise on the need for any further family studies. The laboratory will provide a warning card for all patients who are deemed to be at high risk of sensitivity. This should be carried by the patient so that it can be shown to any surgical team in the future to enable the anaesthetist to give a safe muscle relaxant.
 
What other drugs might be affected?
Cocaine: There are three major routes for the metabolism of cocaine, the most rapid being Butyrylcholinesterase which is responsible for 50% of a given dose. Cholinesterase deficiency may lead to increased plasma concentrations of cocaine in people abusing cocaine and as such they may be more at risk of toxic effects.
Ester local anaesthetics and articaine are best avoided in patients who have a cholinesterase deficiency. This is easily accomplished in dentistry as esters are rarely used as injectables, and primarily used as topicals (benzocaine). Although articaine is an amide, it does have an ester side chain, so it too would be contraindicated. For any dental patient with any level of cholinesterase deficiency one of lidocaine, mepivacaine, or prilocaine may be the best local anaesthetic for dental procedures.
 
Cholinesterase requesting when organophosphate poisoning is suspected.
Diagnosis of organophosphate poisoning is usually clinical, however the finding of a low cholinesterase activity can be supportive. It should be noted that a low enzyme level alone is not diagnostic, unless the patient has a pre-exposure level for comparison, or if an abnormal phenotype or other causes of a low enzyme activity can be excluded. Any urgent requests should be discussed with the duty biochemist (0131 2426879). Any samples with a low activity should ideally be phenotyped, although this is a manual procedure and results cannot be provided as urgently. ‘Normal’ activity levels do not exclude exposure to organophophates, if that level is significantly lower than the patient’s baseline level.
Organic phosphorus insecticides (eg. Parathion, Sarin, tetraethyl pyrophosphate): 40% reduction of serum activity is seen before the first symptoms are felt, a drop of 80% is required before serious neuromuscular effects become apparent. Near or zero levels require emergency treatment with enzyme re-activators (eg pyridine-2-aldoxime). Levels do not return to normal until 5-6 weeks as new enzyme is synthesized by the liver.
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Container_Child1
Volume - Child 1

​0.40 ml

Additive - Adult 1

None

Cholesterol

Anticipated turnaround

1 day

General additional information

Interpret result with reference to current clinical guidelines for prevention of vascular disease. Triglycerides can be done on same sample (fasting sample essential).

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

0.60 ml

Additive - Child 1

Lithium-heparin

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Carcinoembryonic antigen (CEA)

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

Useful in follow up of colorectal and some other cancers. Limited value in diagnosis.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Child1
Volume - Child 1

​0.20 ml

Volume - Adult 1

1.0 ml

Additive - Adult 1

None

Carotenoids

Sample storage arrangements

Put sample in envelope to protect from light.

Anticipated turnaround

​28 days

General additional information

See also vitamin A

Container_Child1
Volume - Child 1

2.00 ml

Additive - Child 1

Lithium-heparin

Calculated free testosterone (male)

Availability

Normal working hours only.

Anticipated turnaround

5 days

General additional information

See also entries for testosterone and SHBG. Request Free Androgen Index (FAI) for females.

Container_Adult1
Container_Adult2
Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Calcium (ionised)

Transport arrangements

Delivery to the laboratory as for a blood gas sample.

Anticipated turnaround

8 hours

Container_Adult1
Additive - Adult 1

Calcium-balanced lithium-heparin

Calcium

Anticipated turnaround

1 day

General additional information

Approximate adjustment for low serum albumin: Ca (adjusted) = Ca (measured) + 0.015 x (42-albumin)

Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1

​0.07 ml

Volume - Adult 1

0.1 ml

Volume - Adult 2

​0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Calcitonin

Transport arrangements

UNSTABLE HORMONE: Sample must be collected on ice and arrive in the laboratory within 15 minutes.

How to request

UNSTABLE HORMONE: notify laboratory/Duty Endocrine Biochemist in advance.

Anticipated turnaround

28 days

General additional information

Samples sent to Glasgow Royal Infirmary

Container_Adult1
Container_Child1
Volume - Child 1

​4.00 ml

Volume - Adult 1

4.0 ml

Additive - Adult 1

Lithium-heparin

CA19-9

How to request

By special arrangement only. Contact Duty Endocrine Biochemist responsible for tumour markers.

Anticipated turnaround

​28 days

Container_Adult1
Container_Adult2
Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

None

CA15-3

How to request

By special arrangement only. Contact Duty Endocrine Biochemist responsible for tumour markers.

Anticipated turnaround

​14 days

Container_Adult1
Volume - Adult 1

1.0 ml

Additive - Adult 1

None

CA125

Availability

Normal working hours only.

Anticipated turnaround

4 days

Static information/disclaimer
General additional information

Useful in follow up of ovarian cancers; of limited value in diagnosis. Please see NICE guidelines on ovarian cancer.

For further information on the potential for biotin interference please click here.

Container_Adult1
Volume - Adult 1

0.5 ml

Additive - Adult 1

None

Bile acids

Anticipated turnaround

1 day

General additional information

​Blood should be taken after fasting for at least 3 hours. Water or tea & coffee (without milk) are allowed during the fast.

The daily dose of ursodeoxycholic acid should be withheld until after the blood test has been taken.

Container_Adult1
Container_Child1
Volume - Child 1

​0.40 ml

Volume - Adult 1

1.0 ml

Additive - Adult 1

None

Atenolol

Special instructions for collection

​Collect sample prior to next dose.

Anticipated turnaround

​14 days

Container_Child1
Volume - Child 1

2 mL

Additive - Child 1

Lithium-heparin

Alpha-1 antitrypsin level and phenotype

Anticipated turnaround

14 days

General additional information
Alpha-1 Antitrypsin (A1AT)
 
A1AT is a serine protease inhibitor (Pi) that acts primarily to protect lung tissue from damage by the body’s own enzymes. Normal serum levels of A1AT are 1.1 to 2.1g/L. A1AT is a slow acute phase reactant with serum levels rising two to three fold within days of trauma, acute infection or tissue necrosis. The quantitation of A1AT is indicated in the evaluation of chronic obstructive airway disease (COPD), emphysema and in neonatal and adult liver disease where low levels may have diagnostic importance.
 
Laboratory policy for performing A1AT Phenotyping
The Clinical Biochemistry Laboratory (WGH) performs A1AT quantitation on all A1AT requests and subsequently A1AT phenotyping where any of the criteria below are met.
· A1AT level is less than or equal to 1.1 g/L.
· Children (18 years or less).
· A1AT phenotyping specifically requested.
 
Therefore, where phenotyping is required, irrespective of the A1AT concentration or age of patient (eg family studies), please make this clear with the request.
Over 100 different alleles of A1AT have been identified. Allele frequencies vary between different populations. The normal allele is M and is present in around 90% of individuals. There are many rare non-deficiency alleles.
 
A1AT Deficiency
 
A1AT deficiency is an inherited disorder and severe genetic deficiencies of A1AT (less than 0.6g/L) occur in the UK with an incidence of about 1:2,000. Typical clinical presentations include chronic obstructive airway disease (COPD) with severe lower lobe panlobular emphysema occurring between 30-40 years of age; neonatal cholestasis and progressive juvenile cirrhosis; and some cases of cirrhosis in adults. Smoking and atmospheric pollution contribute to the severity of the lung disease in deficient subjects. Some individuals with A1AT deficiency remain healthy throughout their lives.
 

The Z and S alleles are the most frequent deficiency alleles found. Individuals with the PiSZ phenotype are at increased risk of lung disease, especially if they smoke. Individuals with the PiZ phenotype are at increased risk of both lung and liver disease. The null allele is the allele of complete A1AT deficiency and can only be identified by formal family studies. Therefore, samples showing only one allele on A1AT phenotyping studies are reported as single allelic symbols (PiM) rather than assuming the homozygous state (PiMM).

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Volume - Child 1

​0.40 ml

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Potassium EDTA

Anti-tissue transglutaminase IgA and IgG (anti-tTG)

Anticipated turnaround

7 days

General additional information

Anti-tTG testing -tTG testing is indicated for the investigation of coeliac disease. Note, a positive test depends on the interaction between dietary gluten and the small intestinal mucosa. Thus, if gluten is withdrawn from the diet prior to testing, the test becomes unreliable as a diagnostic tool. Please see RefHelp pages for further information.

Anti-tTG IgA first line test. Patients with IgA deficiency require anti-tTG IgG.

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Volume - Child 1

0.4

Volume - Child 2

0.07

Additive - Child 1

None

Additive - Child 2

Lithium-heparin

Additive - Adult 1

None

Ammonia

Transport arrangements

UNSTABLE ANALYTE: Must be received on ice within 15 minutes of collection.

How to request

RHSC requests: Contact Duty Biochemist at RHSC ext 20403 to arrange. Out-of-hours contact RIE

RIE requests: Contact Duty Biochemist at RIE ext 26879 to arrange.

WGH requests: Contact Duty Biochemist at WGH ext 31899 to arrange.

SJH requests: Contact Laboratory at SJH ext 53161 to arrange.

Availability

Contact Duty Biochemist at RHSC or RIE to arrange.

Anticipated turnaround

1 day

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Volume - Child 1

​0.5 ml

Additive - Child 1

EDTA

Volume - Adult 1

0.5 ml

Additive - Adult 1

EDTA

Amiodarone

Special instructions for collection

​Collect sample prior to next dose.

Anticipated turnaround

​14 days

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Container_Child1
Volume - Child 1

2.0 ml

Additive - Child 1

Lithium-heparin

Additive - Adult 1

Potassium EDTA

Additive - Adult 2

Lithium-heparin

Aluminium

Anticipated turnaround

28 days

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Container_Child1
Volume - Child 1

​1.0 ml

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Volume - Adult 3

1.0 ml

Additive - Adult 1

None

Additive - Adult 2

Heparin (these must be non-gel tubes so 'Gel' should not appear on label) 

Additive - Adult 3

Lithium Heparin (these must be non-gel tubes so 'Gel' should not appear on label) 

Alkaline phosphatase isoenzymes

Availability

Run as a batch.

Anticipated turnaround

7 days

General additional information

Only performed if total alkaline phosphatase >200 U/L in adults, or greater than the age-specific reference range in children. It is not possible to interpret ALP isoenzymes in children < 6 months.

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Volume - Child 1

​0.2 ml

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Alkaline phosphatase (ALP)

Anticipated turnaround

1 day

General additional information

This is the adult range. Values up to 400 U/L are often observed in childhood and adolescence and up to 3x normal in the third trimester of pregnancy. Age adjusted range quoted with result.

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Volume - Child 1

​0.07 ml

Volume - Adult 1

0.1 ml

Volume - Adult 2

0.1 ml

Additive - Adult 1

None

Additive - Adult 2

Lithium-heparin

Aldosterone:renin ratio

Transport arrangements

Sample should be received in the laboratory on the same day of collection.

Sample storage arrangements

Do not refrigerate samples.

Special instructions for collection

The ARR is a screening test for primary hyperaldosteronism and Endocrine team input is recommended before undertaking this test. A morning sample is preferred, and the patient should be seated for 15 minutes prior to venepuncture. The patient should have unrestricted dietary salt intake. Various anti-hypertensive medications effect renin and aldosterone measurement therefore medications should be noted. Some medications may need to be discontinued for at least 4 weeks, if possible (in particular spironolactone, eplerenone, amiloride, triamterene and potassium-wasting diuretics).

General additional information

A single red cap (EDTA) tube filled to the line (2.7 mL) is sufficient for both renin and aldosterone tests.

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Volume - Child 1

​2.0 ml

Volume - Adult 1

2.7 ml

Aldosterone

Transport arrangements

Sample should be received in the laboratory on the same day of collection.

Sample storage arrangements

Do not refrigerate samples

Special instructions for collection

Note posture and relevant drug therapies e.g. antihypertensives.

How to request

Contact laboratory to discuss investigation for primary hyperaldosteronism.

Anticipated turnaround

10 days

General additional information

Please see the entry for aldosterone:renin ratio.
A single red cap (EDTA) tube filled to the line (2.7 mL) is sufficient for both renin and aldosterone tests.

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Container_Child1
Volume - Child 1

​2.0 ml

Additive - Child 1

Potassium EDTA

Volume - Adult 1

2.7 ml

Additive - Adult 1

Potassium EDTA

Alcohol / Ethanol

Transport arrangements

Send to laboratory immediately.

Special instructions for collection

Fill tube completely.

Anticipated turnaround

1 day

General additional information

Test also known as ethanol. Ethanol (mg/dl) = ethanol (mmol/L) x 4.6

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Volume - Child 1

​1.00 ml

Volume - Adult 1

1.0 ml

Volume - Adult 2

​1.0 ml

Additive - Adult 1

Fluoride-oxalate

Additive - Adult 2

None

First trimester combined antenatal screening test for Down's Syndrome

How to request

A specific first trimester screening form is completed by the midwife and needs to accompany the blood sample. It is essential that the form is completed appropriately as the information provided is used to calculate the reported chance of Down's Syndrome.

Anticipated turnaround

3 days

General additional information

​We offer a NSD designated service, providing screening for the whole of Scotland.

This is a screening test for Down's Syndrome (trisomy 21) which is performed in the first trimester between 11 weeks + 2 days and 14 weeks + 1 day. The biochemical markers PAPP-A and free β-hCG are analysed and the information is combined with the measurement of nuchal translucency, which is determined from the dating ultrasound scan, to report the chance of the baby having Down's Syndrome.

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Volume - Adult 1

2.0 ml

Additive - Adult 1

None

α-Fetoprotein (AFP)

Availability

Normal working hours only.

Anticipated turnaround

4 days

General additional information

TUMOUR MARKER: For maternal screening the sample should be sent with the special Maternal Screening Form which details the information required for risk calculation.

For further information on the potential for biotin interference please click here.

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Volume - Child 1

​0.4 ml

Volume - Adult 1

0.5 ml

Additive - Adult 1

None

Adrenal investigations

General additional information

See individual entries for ACTH, aldosterone, cortisol (serum and urine), renin, short synacthen test and overnight dexamethasone test.

Adrenocorticotropic hormone (ACTH)

Transport arrangements

UNSTABLE HORMONE: Blood must arrive at the laboratory within 30 minutes of collection. Notify the laboratory in advance.

Special instructions for collection

Stressful venepuncture may invalidate the result.

Availability

Normal working hours only.

Anticipated turnaround

6 days

General additional information

For further information on the potential for biotin interference please click here.

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Volume - Child 1

​1.0 ml

Volume - Adult 1

1.0 ml

Additive - Adult 1

Potassium EDTA

Ristocetin Induced Platelet Aggregation (RIPA)

Transport arrangements

​Specimen must be transported within a plastic sealable bag or other suitable container. This assay must be carried out within 2hours of collection.

Sample storage arrangements

​Room Temperature

Special instructions for collection

​Coagulation samples (green top) MUST be filled to the green line indicated on the tube

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

​7 days

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

​The range of drugs known to affect platelet aggreggation responses is wide. Asprin, in particular, will affect the results. The patient should not have taken any aspirin containing medication at least 10days prior to testing. Where patients have low platelet counts, it can be difficult to obtain meaningful aggregation results.

Volume - Child 1

1.4ml

Additive - Child 1

​Sodium Citrate

Volume - Adult 1

​3.0ml

Additive - Adult 1

​Sodium Citrate

Platelet Aggregation Studies

Special instructions for collection

​Sample tubes are provided directly from the Specialist Haemostasis Laboratory. Contact the Laboratory on 0131 242 6837

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Wednesday 09:00 - 13:00
For alternative times, contact the laboratory for special arrangement.
Anticipated turnaround

​21 days

What happens if the result is positive or abnormal

​Results are not phoned. This test is only available by direct requesting from Haematology medical staff.

Static information/disclaimer

​​This test is not accredited to ISO15189 at the Royal Infirmary of Edinburgh.

General additional information

​These studies induce platelet aggregation using the following agonists:

          • Epinephrine
          • Ristocetin
          • Arachidonic Acid
          • Collagen
          • ADP
          • U46619

The range of drugs known to affect platelet aggreggation responses is wide. Asprin, in particular, will affect the results. The patient should not have taken any aspirin containing medication at least 10days prior to testing. Where patients have low platelet counts, it can be difficult to obtain meaningful aggregation results

 

Volume - Adult 1

Tubes are provided within the Haemophilia centre.

Antithrombin (Immune)

Transport arrangements

​Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP ​

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

​14 days

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

​This test is also known as the Quantitiation of Human Antithrombin Antigen.

Volume - Child 1

1.4ml

Additive - Child 1

​Sodim Citrate

Volume - Adult 1

3.0ml​

Additive - Adult 1

Sodium Citrate​

Reptilase Time

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP ​ ​

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

7 days​

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

​The Reptilase test is a screening test, used to distinguish dysfibrinogenaemia from hypofibrinogenaemia.

Volume - Child 1

1.4ml

Additive - Child 1

​Sodium Citrate

Volume - Adult 1

​3.0ml

Additive - Adult 1

​Sodium Citrate

Fibrinogen (Immune)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP ​

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

​7 days

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

​This test is not accredited to ISO15189 at the Royal Infirmary of Edinburgh.

General additional information

​This test is also known as the Quantitiation of Human Fibrinogen Antigen.

Volume - Child 1

 

1.4ml

Additive - Child 1

​Sodium Citrate

Volume - Adult 1

​3.0ml

Additive - Adult 1

Sodium Citrate​

Alpha-2 Antiplasmin

How to request

Must be discussed and arranged with Haematology medical staff.

Availability

Monday - Friday: routine service 09:00 - 17:00. Test is not available during restricted service.​​​

Anticipated turnaround

​14 days

What happens if the result is positive or abnormal

Results are not phoned. This test is only available by direct requesting from Haematology medical staff.

Static information/disclaimer

This test is currently UKAS unaccredited 

Volume - Child 1

1.4ml

Volume - Adult 1

3.0ml

Additive - Adult 1

​Sodium Citrate

VWF Multimers (HMWM)

How to request

Must be discussed and arranged with Haematology medical staff.

Availability

Monday - Friday: routine service 09:00 - 17:00. Test is not available during restricted service.

Anticipated turnaround

21 days.

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant​. Please provide te​lephone/ bleep number.​ ​

Volume - Child 1

1.4ml

Additive - Child 1

​Sodium Citrate

Volume - Adult 1

3.0ml

Additive - Adult 1

​Sodium Citrate

VWf Collagen Binding

How to request

Must be discussed and arranged with Haematology medical staff.

Availability

Monday - Friday: routine service 09:00 - 17:00. Test is not available during restricted service.​​

Anticipated turnaround

​14 days

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant​. Please provide te​lephone/ bleep number.​

Volume - Child 1

1.4ml

Additive - Child 1

​Sodium Citrate

Volume - Adult 1

3.0ml​

Additive - Adult 1

​Sodium Citrate

Chromogenic Factor VIII

Transport arrangements

​Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

​The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test is not available during restricted service.

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant​. Please provide telephone/ bleep number.

Volume - Child 1

1.4ml1.4ml

Additive - Child 1

Sodium Citrate​

Volume - Adult 1

3.0ml​

Additive - Adult 1

​Sodium Citrate

Thrombophilia Screen (including Lupus)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test is not available during restricted service.

Anticipated turnaround

10days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

The Thrombophilia screen comprises:
  • Antithrombin Activity
  • Protein C activity
  • Free Protein S
  • Factor V Leiden Mutation
  • Prothrombin 20210 G-A Mutation
  • Lupus Screen
  • Anticardiolipin IgG
  • Anticardiolipin IgM
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Container_Child4
Volume - Child 1

2 X 1.3ml

Volume - Child 3

0.5ml

Volume - Child 4

1.3ml

Additive - Child 1

Sodium Citrate

Additive - Child 4

EDTA

Volume - Adult 1

2 X 3ml​

Volume - Adult 3

1ml

Volume - Adult 4

2.7ml

Additive - Adult 1

Sodium Citrate

Additive - Adult 4

EDTA

Free Protein S

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

10 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

This test is currently UKAS unaccredited

Volume - Child 1

1.3ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml​

Additive - Adult 1

Sodium Citrate

Protein C Activity

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

10 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

This test is currently UKAS unaccredited

Volume - Child 1

1.3ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml​

Additive - Adult 1

Sodium Citrate

Antithrombin (ATIII) Activity

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

Anticipated turnaround

10 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

This test is currently UKAS unaccredited

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml​

Additive - Adult 1

Sodium Citrate

Thrombophilia Screen (Heritable)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test is not available during restricted service.

Anticipated turnaround

10days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

The Heritable Thrombophilia screen comprises:

  • Antithrombin Activity
  • Protein C activity
  • Free Protein S
  • Factor V Leiden Mutation
  • Prothrombin 20210 G-A Mutation
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Container_Child3
Volume - Child 1

2 X 1.3ml

Volume - Child 3

1.3ml

Additive - Child 1

Sodium Citrate

Additive - Child 3

EDTA

Volume - Adult 1

2 X 3ml

Volume - Adult 3

2.7ml

Additive - Adult 1

Sodium Citrate

Additive - Adult 3

EDTA

Anticardiolipin IgM

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00.

Test not available during restricted service.

Anticipated turnaround

10days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

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Container_Child1
Volume - Child 1

0.5ml

Additive - Child 1

​Lithium Heparin

Volume - Adult 1

1.5ml​

Additive - Adult 1

​None

Anticardiolipin IgG

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test is not available during restricted service.

Anticipated turnaround

10days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

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Container_Child1
Volume - Child 1

0.5ml

Additive - Child 1

​Lithium Heparin

Volume - Adult 1

1ml​

Lupus Screen

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability

Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Test not available during restricted service.

 

Anticipated turnaround

10days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

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Container_Child3
Volume - Child 1

2 X 1.4ml

1.4ml

 

Volume - Child 3

0.5ml

Additive - Child 1

Sodium Citrate

Additive - Child 3

​Lithium-Heparin

Volume - Adult 1

2 X 3ml

Volume - Adult 3

1ml

Additive - Adult 1

Sodium Citrate

Additive - Adult 3

​None

Factor IX Inhibitor assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

10 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml​​

Additive - Adult 1

Sodium Citrate

Factor VIII Inhibitor assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

10 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Refacto Factor VIII

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Volume - Child 1

1.4

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml​

Additive - Adult 1

Sodium Citrate

VWF Activity

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability

Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.

Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.

General additional information

​VWF Activity assay is sometimes referred to as the RICOF.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor XIII Assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

10 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide a telephone/bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor XII:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability

​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00

Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor XI:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide a telelphone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor IX:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telelphone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor VIII:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

​The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide a telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Intrinsic Clotting Factor Assays

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide a telephone/ bleep number.

General additional information

The Intrinsic Clotting Factors comprise FVIII, FIX, FXI and FXII

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor X:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

​The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide a telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor VII:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

​The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor V:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide a telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Factor II:C

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Extrinsic Clotting Factor Assays

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Must be discussed and arranged with Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

7 days

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

​The Extrinsic Clotting Factors comprise, FII, FV, FVII and FX

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Dabigatran Assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak. Note: this assay must be arranged through Haematology medical staff.

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

​​

General additional information

This assay must be arranged through the Haematology medical team. The results will be returned to the Haematology medical team for interpretation. ​

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Rivaroxaban Assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telelphone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Anti Xa Assay (Danaparoid)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal
Results are not phoned. This test is only available by direct requesting from Haematology medical staff.
Static information/disclaimer

This test is currently unaccredited by UKAS

Volume - Child 1

1.4 ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Fondaparinux Assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Anti Xa Assay(unfractionated)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

This test is currently unaccredited by UKAS

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

LMW Heparin Assay

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

General additional information

​For monitoring of Low Molecular Weight Heparin, such as Clexane.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

D-Dimer

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form, GP ICE ordering or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

Static information/disclaimer

This test is currently unaccredited by UKAS

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml​

Additive - Adult 1

Sodium Citrate

VTE Exclusion

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form, GP ICE ordering or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

General additional information

​The VTE exclusion is a measure of D-dimer levels.

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Additive - Adult 5

​​

Fibrinogen (Clauss)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide telephone/ bleep number.

Static information/disclaimer

This test is currently unaccredited by UKAS

General additional information

​This test is sometimes referred to as Fib-C, and forms part of the Coagulation Screen.

For information on the use of Monovettes, please click here - Monovette error flyer FINAL.doc

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

APTT Ratio (Activated Partial Thromboplastin Time Ratio)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant.

General additional information

​The APTT ratio is used to monitor Unfractionated Heparin Therapy

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Activated Partial Thromboplastin Time (APTT)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant.

General additional information

For information on the use of Monovettes, please click here - Monovette error flyer FINAL.doc

Volume - Child 1

1.4ml citrate tube

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Prothrombin Time (PT)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Samples should be transported to the laboratory ASAP

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

Request form or Trak

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00.
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please proved a telephone/ bleep number.

Static information/disclaimer

This test is currently unaccredited by UKAS

General additional information

For information on the use of Monovettes, please click here - ​Monovette error flyer FINAL.doc

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3ml

Additive - Adult 1

Sodium Citrate

Bone Marrow Aspirate

Special instructions for collection

Bone Marrow aspirates are performed by the Haematology Medical Staff. ​

For advice on the procedure for collection, storage and transportation of Bone Marrow samples, please refer to the following document:
 
 
 
 
 
How to request

Must be discussed and arranged with Haematology medical staff. Contact the Haematology registrar via switchboard.

Availability

Test not available during restricted service.

Anticipated turnaround

7 days​

Viscosity - plasma

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container.
How to request
Request form
Availability
Monday - Friday: routine service 09:00 - 17:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
5 days
Container_Adult1
Volume - Adult 1
​>1.5ml
Additive - Adult 1
​EDTA

Urinary Haemosiderin

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container.
Special instructions for collection
20ml fresh early morning urine
How to request
Request form
Availability
Test not available during restricted service.
Anticipated turnaround
5 days
What happens if the result is positive or abnormal
​Results are referred to the Haematology Medical staff.
Container_Adult1
Volume - Adult 1
20ml

Red Cell Folate

How to request
This test is no longer available
Availability

What happens if the result is positive or abnormal

Folate (serum)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container.

How to request

Request form or Trak

Availability

Test not available during restricted service.

Anticipated turnaround

1 day

General additional information

Treatment with folic acid prior to analysis will invalidate result.

For further information on the potential for biotin interference please click here.

Container_Adult1
Container_Adult2
Container_Child1
Container_Child2
Volume - Child 1

​1.0 ml

Volume - Child 2

​1.0 ml

Volume - Adult 1

0.2 ml

Volume - Adult 2

​0.2 ml

Additive - Adult 1

​None

Additive - Adult 2

​Lithium-heparin

HbS (Sickle) Test

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container.
How to request
Request form
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day.
What happens if the result is positive or abnormal
The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information

Blood transfusion may make interpretation unreliable.

HbS test is also know as the Sickledex or Solubility Test for Sickle cell anaemia.

All HbS test results are confirmed by a full Haemoglobinopathy screen.

Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml​
Additive - Adult 1
​EDTA

HbS Quantitation

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection .
How to request
Request form/ TRAK
Availability
Monday - Friday: routine service 09:00 - 17:00. Test not available during restricted service.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
Haemoglobinopathy results are not telephoned. A detailed report will be sent out when available.
General additional information
Blood transfusion may make interpretation unreliable.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
EDTA

Haemoglobinopathy Screen

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Special instructions for collection

​​A Full Blood Count is always performed alongside the Haemoglobinopathy screen.

How to request

Request form/ TRAK/ GP Order Comms

Availability

Monday - Friday: routine service 09:00 - 17:00. Test not available during restricted service.

Anticipated turnaround

15 days

What happens if the result is positive or abnormal

Haemoglobinopathy results are not telephoned. A detailed report will be sent out in when available.

General additional information

Blood transfusion may make interpretation unreliable. If a haemoglobinopathy cannot be characterised then further studies may be undertaken.

This assay detects the presence of the abnormal haemoglobins, HbC, HbD, HbE, HbS and other rarer variants. The quantitation will be reported as appropriate.

The haemoglobinopathy screen is sometimes referred to as a Thalassaemia Screen.

Container_Adult1
Container_Child1
Volume - Child 1

1.2ml K3 EDTA monovette tube

>0.5ml required

Additive - Child 1

EDTA

Volume - Adult 1

​>1.5ml

Additive - Adult 1

​EDTA

Serum Haptoglobin

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container.
How to request
Request form or Trak
Availability
Test not available during restricted service.
Anticipated turnaround
2 days
Container_Adult1
Container_Adult2
Container_Child1
Volume - Child 1
​0.2​ml
Additive - Child 1
​​Lithium-heparin.
Volume - Adult 1
2ml
Volume - Adult 2
​2ml
Additive - Adult 1
​None
Additive - Adult 2
​Lithium-heparin

ITGA2B or ITGB3 screen for detection of familial mutation (Glanzmann thrombaesthenia)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

ITGA2B and ITGB3 full genetic screening for Glanzmann thrombaesthenia

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE.

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

 

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

F13A1 or F13B screen for detection of familial mutation (FXIII deficiency)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4-6 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml

Additive - Adult 1

​EDTA

F13A1 and F13B full genetic screening for FXIII deficiency

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

 

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml

Additive - Adult 1

​EDTA

LMAN1 or MCFD2 screen for detection of familial mutation (Combined FV and FVIII deficiency)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

LMAN1 and MCFD2 full genetic screen for combined factor V and VIII deficiency

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

MYH9 screen for detection of familial mutation (Macrothrombocytopenia)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​​

Additive - Adult 1

​EDTA

MYH9 gene screen for inherited macrothrombocytopenia

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​​

Additive - Adult 1

​EDTA

Antithrombin Deficiency screen for detection of familial mutation (SERPINC1)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

For more information see the molecular genetics service webpage: 

https://services.nhslothian.scot/clinicalgeneticsservice/GeneticLaboratoryServices/molecular_genetics/Pages/default.aspx or

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

Minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

Antithrombin deficiency full genetic screen (SERPINC1)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

6-8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​Minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​​

Additive - Adult 1

​EDTA

Protein C deficiency screen for detection of familial mutation (PROC)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

Protein C deficiency full genetic screen (PROC)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

Fibrinogen screen for detection of familial mutation (hypo/dis/afibrinogenaemia)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

 

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

Fibrinogen full genetic screen for hypo/dis/afibrinogenaemia

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x2.7ml​

Additive - Adult 1

​EDTA

F10 screen for detection of familial mutation (FX deficiency)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

Minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

2.7ml​​​

Additive - Adult 1

​EDTA

F10 full genetic screen for FX deficiency

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x2.7ml​

Additive - Adult 1

​EDTA

F5 screen for detection of familial mutation (FV deficiency)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

.
Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

F5 full genetic screen for FV deficiency

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

F7 screen for detection of familial mutation (FVII deficiency)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

F7 full genetic screen for FVII deficiency

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE.

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

​A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

F11 screen for detection of familial mutation (FXI deficiency)

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

Minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml​

Additive - Adult 1

​EDTA

F11 full genetic screen for FXI deficiency

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

Minimum volume of 1ml is required.

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x2.7ml​

Additive - Adult 1

​EDTA

VWF screen for detection of familial mutation

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml

Additive - Adult 1

​EDTA

VWF full genetic screen for VWD

Transport arrangements

Lab van or 1st class post.

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

Haemophilia A or B prenatal diagnosis - contact lab for advice

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

Contact laboratory for advice on 0131 537 1116

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

 

 

Volume - Adult 1

Contact laboratory for advice​

Haemophilia B carrier testing

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml

Additive - Adult 1

​EDTA

Haemophilia B full genetic screen

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

Haemophilia A carrier testing

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

4 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

Contact the laboratory on 0131 537 1116.

Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2.7ml

Additive - Adult 1

​EDTA

Haemophilia A full genetic screen

Transport arrangements

Lab van or 1st class post

Sample storage arrangements

Refrigerate - DO NOT FREEZE

Availability

Test not available during restricted service.

Anticipated turnaround

6-8 weeks

What happens if the result is positive or abnormal

Results of all genetic tests are reported to the referring clinician.

General additional information

Citrated anticoagulated venous blood, or DNA extracted from EDTA or citrated blood, may be sent instead of an EDTA specimen.

For more information see the molecular genetics service webpage: 

https://services.nhslothian.scot/clinicalgeneticsservice/GeneticLaboratoryServices/molecular_genetics/Pages/default.aspx or

Contact the laboratory on 0131 537 1116.

 
Container_Adult1
Container_Child1
Volume - Child 1

A minimum volume of 1ml is required

Additive - Child 1

​EDTA

Volume - Adult 1

​2 x 2.7ml​

Additive - Adult 1

​EDTA

UGT1A1 promoter analysis in Gilbert syndrome

Transport arrangements
Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post.
Sample storage arrangements
Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight.
How to request
Request form
Availability
Test not available during restricted service.
Anticipated turnaround
6-8 weeks
What happens if the result is positive or abnormal
Genetic results will not be telephoned. They can be emailed if secure addresses are verified.
General additional information

Samples for UGT1A1 mutation screening are prepared at RIE and forwarded to the national reference laboratory at Ninewells Hospital in Dundee where they are screened using PCR analysis for detection of the TA repeat in the promoter region. The subsequent reports are returned to RIE for distribution to the requesting clinician.

Container_Adult1
Volume - Adult 1
​2.7ml​​​
Additive - Adult 1
​EDTA

HFE genotype analysis for haemochromatosis

Transport arrangements
Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post.
Sample storage arrangements
Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight.
How to request
Request form
Availability
Test not available during restricted service.
Anticipated turnaround
6-8 weeks
What happens if the result is positive or abnormal
Genetic results will not be telephoned. They can be emailed if secure addresses are verified.
General additional information

​Samples for HFE analysis are prepared at RIE and forwarded to the national reference laboratory at Ninewells Hospital in Dundee for testing. The subsequent reports are returned to RIE for distribution to the requesting clinician.

Container_Adult1
Volume - Adult 1
​2.7ml​​​
Additive - Adult 1
EDTA​

Prothrombin G20210A and Factor V Leiden screen for Thrombophilia

Transport arrangements

Specimens should be kept at room temperature and sent directly to the laboratory as soon as possible by first class post. Specimen must be transported within a plastic sealable bag or other suitable container.

Sample storage arrangements

Specimens must NOT be frozen. If a delay in sending a specimen is unavoidable it must be refrigerated overnight.

How to request

Request form. Electronic ordering where available (e.g. TRAK)

Availability

Monday - Friday: routine service 09:00 - 17:00. Test not available during restricted service.

Anticipated turnaround

21 days

What happens if the result is positive or abnormal

Genetic results will not be telephoned. They can be emailed if secure addresses are verified.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

The Prothrombin G20210A and Factor V Leiden screen for Thrombophilia forms part of the wider 'Hereditary Thrombophilia Screen' and are often requested together. However, the genetic testing is performed in a separate Laboratory and as a result, a separate report will be issued with the Prothrombin G20210A and Factor V Leiden results.

Citrated anticoagulated venous blood or 150µl DNA may be sent instead of an EDTA specimen.

Container_Adult1
Volume - Adult 1

 2.7ml

Additive - Adult 1

​EDTA

Erythrocyte Sedimentation Rate (ESR)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Sample storage arrangements

Optimally test is performed within 4 hours of collection.

Special instructions for collection

Please fill tube to the requisite level.

How to request

Request form, GP ICE or Trak ordering

Availability

Monday - Friday: routine service 09:00 - 17:00, Saturday - Sunday: routine service 09:00 - 13:00.

Please contact the laboratory for urgent samples outside of routine hours.

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The laboratory will telephone results for patients with clinical details of TA, giant cell arteritis or polymyalgia rheumatica.

General additional information

The new tube type (2.6ml EDTA - red top) will take effect from 05/2/2024
 

Container_Adult1
Container_Child1
Volume - Child 1

From Monday 05/02/2024: 2.6ml Red EDTA tube must also be sent for paediatric requests due to volume of blood required to perform the test.

Additive - Child 1

EDTA K3E

Volume - Adult 1

​From Monday 05/02/2024: 2.6ml red topped EDTA tube

​​

Additive - Adult 1

EDTA K3E

Malarial Ag Test

Transport arrangements

Please refer to Malarial Parasite Screen.

Sample storage arrangements

Please refer to Malarial Parasite Screen

How to request

Please refer to Malarial Parasite Screen

Availability

Please refer to Malarial Parasite Screen

Anticipated turnaround

4 hours from arrival in laboratory

What happens if the result is positive or abnormal

Please refer to Malarial Parasite Screen

General additional information

The Malarial Ag Test is an RDT card test and is performed as part of the Malarial Parasite Screen, which includes the FBC and microscopic examination of thick and thin blood films to identify species. The card test can assist in the differential diagnosis between P. falciparum and the other Pan specific species (P.vivax, P.ovale, P.malariae).

NB at present it cannot be confirmed that the card test can indicate the presence of less common species, such as Plasmodium knowlesi.

Container_Adult1
Container_Child1
Volume - Child 1

1.2 K3 EDTA

Additive - Child 1

EDTA

Volume - Adult 1

​>1.5ml

Additive - Adult 1

EDTA

Malarial Parasite Screen

Transport arrangements

Specimen must be transported immediately within a plastic sealable bag or other suitable container. Malaria is considered a medical emergency - please contact the laboratory to alert them the sample is in transit.

Sample storage arrangements

Optimally test is performed within 2 hours of collection

How to request

Request form or Trak

Availability

No restrictions: Malaria is considered a medical emergency - please contact the laboratory to alert them the sample is in transit.

Anticipated turnaround

4 hours from arrival in laboratory

What happens if the result is positive or abnormal

The laboratory will phone the results of this test as soon as they are available. Please provide a telephone/ bleep number.

General additional information

​The Patients FULL travel history MUST be documented in the request, as this information aids in the speciation of Malaria. The Malarial Parasite screen comprises an Antigen test, and Thick and Thin blood Films are viewed. A Full Blood Count is always performed alongside the Malarial Parasite screen. In line with Scottish Public Health Act (2008) all specimens testing positive for Plasmodium species will be reported to Health Protection Scotland by the Diagnostic Laboratory and will be forwarded to undergo confirmatory testing at the Scottish Parasite Diagnostic Reference Laboratory

Container_Adult1
Container_Child1
Volume - Child 1

1.2ml K3 EDTA tube

Additive - Child 1

EDTA

Volume - Adult 1

2.6ml EDTA tube with ​>1.5ml required

Additive - Adult 1

​EDTA

Infectious Mononucleosis (IM) Screen.

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Sample storage arrangements

Room Temperature

How to request

Request form or Trak

Availability

Monday - Friday: routine service 09:00 - 17:00, Saturday - Sunday: routine service 09:00 - 13:00. For urgent samples outside routine hours, please contact the laboratory.

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The normal / expected result is negative.

Positive results will be seen on the result report. There is no clinical need to telephone positive results to the clinical area.

General additional information

This test is also known as the Paul Bunnell Test/ Monospot/ Glandular Fever Test. The Full Blood Count is always performed alongside the IM screen.

Container_Adult1
Container_Child1
Volume - Child 1

1.2ml red topped EDTA tube required, >0.5ml required to perform the test

 

Additive - Child 1

EDTA

Volume - Adult 1

2.6ml Red topped EDTA tube, ​>1.5ml volume required to perform the test

Additive - Adult 1

EDTA

Nucleated Red Blood Cells

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours. ​
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The presence of Nucleated Red Blood Cells (NRBCs) is identified by microscopy, and is performed alongside the Full Blood Count.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml​
Additive - Adult 1
​EDTA

Blast Cells

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours. ​
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The presence of Blast Cells is identified by microscopy, and is performed alongside the Full Blood Count.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml​
Additive - Adult 1
​EDTA

Promyelocytes

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours. ​
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The presence of Promyelocytes is identified by microscopy, and is performed alongside the Full Blood Count.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml​​
Additive - Adult 1
​EDTA

Metamyelocytes

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours. ​
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
The presence for Metamyelocytes is identified by microscopy, and is performed alongside the Full Blood Count. ​
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml​
Additive - Adult 1
EDTA​

Myelocytes

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
The presence of Myelocytes is identified by microscopy, and is performed alongside the Full Blood Count. ​
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml​
Additive - Adult 1
​EDTA

Platelet count

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature
How to request
Request form or Trak ​
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Platelet Count is performed as part of the Full Blood Count
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml​
Additive - Adult 1
​EDTA

Basophil Count

Transport arrangements

​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Sample storage arrangements

​Room temperature​

How to request

​Request form or Trak

Availability

​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.

General additional information

​The Basophil Count is performed as part of the Full Blood Count

Container_Adult1
Container_Child1
Volume - Child 1

>0.5ml

Additive - Child 1

EDTA

Volume - Adult 1

>1.5ml​

Additive - Adult 1

​EDTA

Eosinophil Count

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
The Eosinophil Count is performed as part of the Full Blood Count.​
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml
Additive - Adult 1
​EDTA

Monocyte Count

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Monocyte count is performed as part of the Full Blood Count.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
EDTA

Lymphocyte Count

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Lymphocyte count is performed as part of the Full Blood Count
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
​EDTA

Neutrophil Count

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Neutrophil Count is performed as part of the Full Blood Count
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
​EDTA

White Cell Count

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection ​
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
The White Cell Count is performed as part of the Full Blood Count​
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml​
Additive - Adult 1
​EDTA

Mean Cell Volume (MCV)

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Mean Cell Volume (MCV) is performed as part of the Full Blood Count
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml​
Additive - Adult 1
EDTA​

Mean Cell Haemoglobin Concentration (MCHC)

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection​
Sample storage arrangements
Room temperature​ ​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Mean Cell Haemoglobin Concentration (MCHC) is performed as part of the Full Blood Count.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
​EDTA

Mean Cell Haemoglobin (MCH)

Transport arrangements
Please refer to Full Blood CountSpecimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
​Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Mean Cell Haemoglobin (MCH) is performed as part of the Full Blood Count.
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
EDTA

Reticulocyte Count

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved as soon as possible, as reticulocytes continue to mature within the sample tube.

Sample storage arrangements

Room temperature​

How to request
Request form or Trak
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.

General additional information

A Full Blood Count is always performed alongside the Reticulocyte count.

Reticulocyte count is often referred to as 'retic count'.

Blood transfusion may make interpretation unreliable.

Container_Adult1
Container_Child1
Volume - Child 1

1.2ml K3 EDTA monovette tube

>0.5ml required

Additive - Child 1

EDTA

Volume - Adult 1

​>1.5ml

Additive - Adult 1

​EDTA

Haematocrit (HCT)

Transport arrangements
​Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
Room temperature​ ​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
The Haematocrit (HCT) is performed as part of the Full Blood Count and is sometimes referred to as the Packed Cell Volume (PCV).​
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
EDTA

Red Cell Count

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
Room temperature​
How to request
​Request form or Trak
Availability
​Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
The Red Cell Count is performed as part of the Full Blood Count​
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
>1.5ml​
Additive - Adult 1
EDTA​

Haemoglobin (Hb)

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
Room temperature​
How to request
Request form or Trak
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 day
What happens if the result is positive or abnormal
The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.
General additional information
​The Haemoglobin is performed as part of the Full Blood Count
Container_Adult1
Container_Child1
Volume - Child 1
>0.5ml
Additive - Child 1
EDTA
Volume - Adult 1
​>1.5ml
Additive - Adult 1
​EDTA

Full Blood Count (FBC)

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Sample storage arrangements

Room temperature​

Special instructions for collection

​N/A

How to request

Request form or Trak

Availability

Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours. ​

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.

General additional information

Test is also know as CBC (Complete Blood Count). For infomation on Monovette use, please click here - Monovette error flyer FINAL.doc

Container_Adult1
Container_Child1
Volume - Child 1

1.2ml K3 EDTA tube

1.2ml

 

Additive - Child 1

EDTA

Volume - Adult 1

2.6ml Red topped EDTA tube, >1.5mls volume required in the tube for processing

Additive - Adult 1

​EDTA

DAT (Direct Antiglobulin Test)

Transport arrangements
Sample should be received within 24 hours of collection
Sample storage arrangements
Room Temperature
How to request
Request Form / TRAK
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 Day
What happens if the result is positive or abnormal
The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number. ​
General additional information
Test also known as DCT (Direct Coombs Test) and Coombs Test
Container_Adult1
Container_Child1
Volume - Child 1
1.0ml
Additive - Child 1
EDTA
Volume - Adult 1
2.7ml
Additive - Adult 1
EDTA

Crossmatch

Transport arrangements
Sample MUST be received within 24 hours of collection
Sample storage arrangements
Store at 4°;C
Special instructions for collection

NHS Lothian operates a Zero Tolerance approach in relation to blood sample acceptance criteria. Errors in patient identification and sample labelling may lead to ABO-incompatible transfusions.

The demographics on the samples MUST be hand written, legible and MUST match exactly to the accompanying request form. Samples labelled with an addressograph or where evidence of an addressograph have been attached will be discarded. Samples with errors or where patient core identifiers have been obliterated will be discarded.

Sample Labelling

The following patient identifying data and sampler signature is mandatory -

  • CHI number (or Hospital Number where no CHI number is available - See CHI exceptions)*
  • Surname
  • Forename
  • Date of Birth
  • Signature

Sample Labelling for Unknown Patients

  • Surname / Forename = UNKNOWN
  • Temporary Identification Number = beginning with 700
  • Gender
  • Sample dated and signed

Once patients details become known, a new sample must be sent to the laboratory

Request Form Labelling

Addressograph labels are acceptable for request forms. If the form is handwritten then the information must be clear, legible and MUST contain the following data identifiers -

  • Surname
  • Forename
  • Date of Birth
  • CHI Number (See CHI exceptions)*
  • Name and signature of the person taking the sample
  • Name of the requesting clinician. (For component requests, this is the Doctor or authorised Nurse that has prescribed the transfusion)
  • Clinical details are desirable but are not essential

*CHI Exceptions

Not all patients will have a CHI number. If the patient is a genuine CHI exception then the Hospital number is acceptable and MUST be used. A CHI number may not be available in the following circumstances -

  • Foreign visitors
  • Patients from England, Wales and Ireland
  • Patients not registered with a GP in Scotland
  • Patients currently remanded within Her Majesty's Prisons
  • Patients in the armed forces
  • Newborn infants <3 days old.

A MINIMUM of 2.0ml of blood is required for adult specimens. For paediatric patients, please refer to the link below for specimen types and volume ranges.

Blood Tubes and Volume Ranges for Babies and Children (Blood Transfusion)
How to request
Request Form (Obtained from Blood Transfusion Laboratory WGH / SJH)
Availability
Mon - Fri Routine service 09:00 - 17:00. Sat / Sun Routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

The turnaround time is dependant on the urgency of blood requirement and whether the patient has atypical antibodies.

What happens if the result is positive or abnormal
In certain circumstances, some samples may require referral to an external SNBTS reference laboratory depending upon the complexity of the testing required. This requirement for referral may lead to delays in the provision of red blood cells to the patient for routine transfusions
 
Referred samples may include -
 
Those samples where an antibody directed against a high frequency antigen is identified.

These antibodies usually show pan reactivity against all routine reagent red cells making exclusion of clinically significant antibodies difficult or impossible.
 
Auto Immune Haemolytic Anaemia (AIHA)
 
In patients with AIHA, autoantibodies often cause laboratory problems making determination of the ABO and Rh group problematic and prevent effective antibody screening due to cross reacting antibodies. While transfused cells are present in the circulation, allo antibodies can be made which may be masked by the stron auto antibody.
 
Anti-CD38 Interference (Daratumumab)
 
Daratumumab is an anti-CD38 monoclonal antibody which has proven to be highly efficacious for the treatment of those patients with relapsed and refactory Multiple Myeloma (MM). This therapy however interferes with blood transfusion testing by binding to CD38 present on the surface of red cells and causing panagglutination in the antibody screen; thereby making exclusion of clinically significant all antibodies impossible without additional specialised testing.
 
  • If for what ever reason the sample is unsuitable for testing, the ward or doctor will be informed.
     
  • If atypical antibodies are identified, the ward or doctor will be informed and extra samples will be requested for further investigation.
     
  • If there is a requirement for sample referral, the ward or doctor will be informed.
     
  • Please ensure that the request form contains a location and contact number (ward extension or bleep number) so that the information above may be conveyed.
General additional information
As per BSH guidance and recommendations from SHOT reports, it is required that a patient’s blood group has been confirmed from two blood samples taken on separate occasions before issuing blood components for transfusion. This measure is intended to reduce the risk of transfusing components of the wrong blood group.
It is important to note that all cellular blood components contain residual red cells and can therefore illicit an immune response. To ensure that the specimen used for compatibility testing is representitive of a patients current immune status, serological studies should be performed using blood collected no more than three days in advance of the actual transfusion when the patient has been transfused, or has been pregnant within the preceeding three months, or when such information is uncertain or unavailable. Where there has been no transfusion or pregnancy within the preceeding three months, the sample will be valid for seven days.
For further information regarding pre transfusion compatability procedures and appropriate use of blood and products, please refer to the BSH Guidelines

Test also known as Group & Screen / Group and Hold

Container_Adult1
Container_Child1
Volume - Child 1

1.0ml. For more details, see below 'Special instructions for collection'

Additive - Child 1

EDTA

Volume - Adult 1

4.5ml​

Additive - Adult 1

EDTA

Antibody Investigation

Transport arrangements
Sample MUST be received within 24 hours of collection
Sample storage arrangements
Store at 4°;C
Special instructions for collection

NHS Lothian operates a Zero Tolerance approach in relation to blood sample acceptance criteria. Errors in patient identification and sample labelling may lead to ABO-incompatible transfusions.

The demographics on the samples MUST be hand written, legible and MUST match exactly to the accompanying request form. Samples labelled with an addressograph or where evidence of an addressograph have been attached will be discarded. Samples with errors or where patient core identifiers have been obliterated will be discarded.

Sample Labelling

The following patient identifying data and sampler signature is mandatory -

  • CHI number (or Hospital Number where no CHI number is available - See CHI exceptions)*
  • Surname
  • Forename
  • Date of Birth
  • Signature

Sample Labelling for Unknown Patients

  • Surname / Forename = UNKNOWN
  • Temporary Identification Number = beginning with 700
  • Gender
  • Sample dated and signed

Once patients details become known, a new sample must be sent to the laboratory

Request Form Labelling

Addressograph labels are acceptable for request forms. If the form is handwritten then the information must be clear, legible and MUST contain the following data identifiers -

  • Surname
  • Forename
  • Date of Birth
  • CHI Number (See CHI exceptions)*
  • Name and signature of the person taking the sample
  • Name of the requesting clinician. (For component requests, this is the Doctor or authorised Nurse that has prescribed the transfusion)
  • Clinical details are desirable but are not essential

*CHI Exceptions

Not all patients will have a CHI number. If the patient is a genuine CHI exception then the Hospital number is acceptable and MUST be used. A CHI number may not be available in the following circumstances -

  • Foreign visitors
  • Patients from England, Wales and Ireland
  • Patients not registered with a GP in Scotland
  • Patients currently remanded within Her Majesty's Prisons
  • Patients in the armed forces
  • Newborn infants

A MINIMUM of 2.0ml of blood is required for adult specimens. For paediatric patients, please refer to the link below for specimen types and volume ranges.


How to request

An Antibody Investigation is performed as a reflex test when the antibody screen (as part of the Group and Save) is found to be positive. In this instance, extra samples will usually be requested and must be sent to the lab with an accompanying request form.

Request Form (Obtained from Blood Transfusion Laboratory WGH / SJH)

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
Dependant on complexity of Antibody / Antibody combinations
What happens if the result is positive or abnormal
If for what ever reason the sample is unsuitable, the ward / doctor will be informed. Depending on the antibody / antibody combinations identified, extra samples may be requested for further investigation. Please provide a telephone / bleep number.
Container_Adult1
Container_Child1
Volume - Child 1
2 X 4.5ml
Additive - Child 1
EDTA
Volume - Adult 1
3 X 4.5ml
Additive - Adult 1
EDTA

Group and Save

Transport arrangements

Sample MUST be received within 24 hours of collection

Sample storage arrangements

Store at 4°;C

Special instructions for collection

NHS Lothian operates a Zero Tolerance approach in relation to blood sample acceptance criteria. Errors in patient identification and sample labelling may lead to ABO-incompatible transfusions.

The demographics on the samples MUST be hand written, legible and MUST match exactly to the accompanying request form. Samples labelled with an addressograph or where evidence of an addressograph have been attached will be discarded. Samples with errors or where patient core identifiers have been obliterated will be discarded.

Sample Labelling

The following patient identifying data and sampler signature is mandatory -

  • CHI number (or Hospital Number where no CHI number is available - See CHI exceptions)*
  • Surname
  • Forename
  • Date of Birth
  • Signature

Sample Labelling for Unknown Patients

  • Surname / Forename = UNKNOWN
  • Temporary Identification Number = beginning with 700
  • Gender
  • Sample dated and signed

Once patients details become known, a new sample must be sent to the laboratory

Request Form Labelling

Addressograph labels are acceptable for request forms. If the form is handwritten then the information must be clear, legible and MUST contain the following data identifiers -

  • Surname
  • Forename
  • Date of Birth
  • CHI Number (See CHI exceptions)*
  • Name and signature of the person taking the sample
  • Name of the requesting clinician. (For component requests, this is the Doctor or authorised Nurse that has prescribed the transfusion)
  • Clinical details are desirable but are not essential

*CHI Exceptions

Not all patients will have a CHI number. If the patient is a genuine CHI exception then the Hospital number is acceptable and MUST be used. A CHI number may not be available in the following circumstances -

  • Foreign visitors
  • Patients from England, Wales and Ireland
  • Patients not registered with a GP in Scotland
  • Patients currently remanded within Her Majesty's Prisons
  • Patients in the armed forces
  • Newborn infants <3 days old.

A MINIMUM of 2.0ml of blood is required for adult specimens. For paediatric patients, please refer to the link below for specimen types and volume ranges.

Blood Tubes and Volume Ranges for Babies and Children (Blood Transfusion)

 

How to request

Request Form (Obtained from Blood Transfusion Laboratories WGH / SJH)

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
1 Day for Non-clinically urgent cases
What happens if the result is positive or abnormal
In certain circumstances, some samples may require referral to an external SNBTS reference laboratory depending upon the complexity of the testing required. This requirement for referral may lead to delays in the provision of red blood cells to the patient for routine transfusions
 
Referred samples may include -
 
Those samples where an antibody directed against a high frequency antigen is identified.

These antibodies usually show pan reactivity against all routine reagent red cells making exclusion of clinically significant antibodies difficult or impossible.
 
Auto Immune Haemolytic Anaemia (AIHA)
 
In patients with AIHA, autoantibodies often cause laboratory problems making determination of the ABO and Rh group problematic and prevent effective antibody screening due to cross reacting antibodies. While transfused cells are present in the circulation, allo antibodies can be made which may be masked by the stron auto antibody.
 
Anti-CD38 Interference (Daratumumab)
 
Daratumumab is an anti-CD38 monoclonal antibody which has proven to be highly efficacious for the treatment of those patients with relapsed and refactory Multiple Myeloma (MM). This therapy however interferes with blood transfusion testing by binding to CD38 present on the surface of red cells and causing panagglutination in the antibody screen; thereby making exclusion of clinically significant all antibodies impossible without additional specialised testing.
 
  • If for what ever reason the sample is unsuitable for testing, the ward or doctor will be informed.
     
  • If atypical antibodies are identified, the ward or doctor will be informed and extra samples will be requested for further investigation.
     
  • If there is a requirement for sample referral, the ward or doctor will be informed.
     
  • Please ensure that the request form contains a location and contact number (ward extension or bleep number) so that the information above may be conveyed.
General additional information
As per BSH guidance and recommendations from SHOT reports, it is required that a patient’s blood group has been confirmed from two blood samples taken on separate occasions before issuing blood components for transfusion. This measure is intended to reduce the risk of transfusing components of the wrong blood group.
It is important to note that all cellular blood components contain residual red cells and can therefore illicit an immune response. To ensure that the specimen used for compatibility testing is representitive of a patients current immune status, serological studies should be performed using blood collected no more than three days in advance of the actual transfusion when the patient has been transfused, or has been pregnant within the preceeding three months, or when such information is uncertain or unavailable. Where there has been no transfusion or pregnancy within the preceeding three months, the sample will be valid for seven days.
For further information regarding pre transfusion compatability procedures and appropriate use of blood and products, please refer to the BSH Guidelines

Test also known as Group & Screen / Group and Hold

 

Container_Adult1
Container_Child1
Volume - Child 1

1.0ml For more details, see 'Special instructions for collection'

Additive - Child 1

EDTA

Volume - Adult 1

4.5ml

Additive - Adult 1

EDTA

Haemolytic Screen

Transport arrangements
Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection
Sample storage arrangements
Room Temperature
How to request
TRAK / Request form
Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround
4 Hours
What happens if the result is positive or abnormal
Positive Haemolytic Screens will be reviewed by a member of the medical team who will contact the appropriate department if necessary. Please provide a telephone/ bleep number.
General additional information

The Haemolytic Screen compirises

      • FBC
      • Blood Film Examination
      • Reticulocyte Count
      • DAT
Container_Adult1
Container_Child1
Volume - Child 1
​>0.5ml
Additive - Child 1
​EDTA
Volume - Adult 1
>1.5ml
Additive - Adult 1
EDTA

G-6-PD Quantification

Transport arrangements

Specimen must be transported within a plastic sealable bag or other suitable container. Sample MUST be recieved within 24 hours of collection

Sample storage arrangements

Room Temperature

How to request

TRAK / Request form

Availability
Monday - Friday: routine service 09:00 - 17:00.
Anticipated turnaround

4 Days

What happens if the result is positive or abnormal

Any G6PD deficiency/severe deficiency will be referred to a Haematology Consultant. A letter to the requester and patient/family will follow (G6PD deficiency) or an appointment will be offered for Haematology review (severe G6PD deficiency).

Static information/disclaimer

This test is currently unaccredited by UKAS (ISO15189)

Container_Adult1
Container_Child1
Volume - Child 1

​>0.5ml

Additive - Child 1

​EDTA

Volume - Adult 1

>1.5ml

Additive - Adult 1

EDTA

CSF Cell Count and Differential

Transport arrangements

Microscopy for cell count must be performed within 2 hours of specimen collection; please transport to lab as soon as possible.

Sample storage arrangements

Store at room temperature if transport is delayed.

Special instructions for collection

Useful: Analysis of CSF cell count and white cell differential may be useful in the diagnosis of meningitis, encephalitis, ventriculitis or sub-arachnoid haemorrhage.

Aseptic technique must be used. Minimum of 1-3mls required for cell count and bacterial culture. 

How to request

Via Trak (at RIE and SJH "C&S - CSF", at WGH "CSF cell count WGH")

Availability
WGH - Haematology: Monday - Friday: routine service 09:00 - 16:00.  Outside these hours, please courier sample to RIE and contact the RIE bacteriology laboratory for urgent samples.
 
SJH Bacteriology - 0900 - 1700 Mon - Fri, 0900-1600 Sat and Sun. CSF samples taken during the above opening times: Once CSF sample is taken, contact the Microbiology Lab at SJH on EXT 53077 or 53080 to alert them, a sample has been taken (giving patient and contact details). Sample must be taken to the Microbiology Lab at SJH. If out of hours, contact the SJH biochemistry lab on bleep 3728 to alert them a sample is coming, contact the Microbiology BMS at the RIE on ext. 26021 or bleep 2900. SJH biochemistry will arrange transport to Microbiology at RIE. 
 
RIE: for samples out of hours, please contact Microbiology BMS at RIE on ext 26021 or bleep 2900. 
Anticipated turnaround

Microscopy within 30 minutes of receipt. Culture: up to 4 days.

What happens if the result is positive or abnormal

Result will automatically appear on TRAK and will be phoned by BMS. Clinical interpretation required.

General additional information

At the WGH, this sample is processed by Haematology. An automated white cell count is performed on the sample. If white cells are found, a cytospin is prepared, and a manual white cell differential is performed by microscopy.  For further information, please contact the laboratory on 0131 537 1914. See also test "Cerebrospinal fluid - Routine M, C & S"

Volume - Adult 1

1 - 3ml

Additive - Adult 1

No additive

Blood Film Examination

Transport arrangements

Sample MUST be received within 24 hours of collection

Sample storage arrangements

Room Temperature

How to request

TRAK / GP ICE / Request form

Availability
Monday - Friday: routine service 09:00 - 17:00. Saturday - Sunday: routine service 09:00 - 13:00
Please contact the laboratory for urgent samples outside of routine hours.
Anticipated turnaround

1 day (24 hours)

What happens if the result is positive or abnormal

The Full Blood Count is always performed alongside the Blood Film Examination. Blood Films with unexpected morphology will be reviewed by a member of the medical staff who will contact the appropriate department if necessary. Please provide a telephone/ bleep number.

Container_Adult1
Container_Child1
Volume - Child 1

1.2ml K3 EDTA tube

1.2ml

 

Additive - Child 1

EDTA

Volume - Adult 1

2.6ml red topped EDTA tube, >1.5ml volume required to perform the test

Additive - Adult 1

EDTA

INR (International Normalised Ratio)

Transport arrangements

Sample should reach the laboratory as soon as possible, post collection.

Sample storage arrangements

Room Temperature

Special instructions for collection

Coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

TRAK / Request form

Availability

Mon - Fri Routine service 09:00 - 17:00. Sat / Sun Routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.

Anticipated turnaround

1 day

What happens if the result is positive or abnormal

The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.

General additional information

This test is used for Warfarin Control.

For information on the use of Monovettes, please click here - Monovette error flyer FINAL.doc

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3.0ml

Additive - Adult 1

Sodium Citrate

Coagulation Screen

Transport arrangements

​Samples should reach the laboratory as soon as possible, post collection.

Sample storage arrangements

Room Temperature

Special instructions for collection

The coagulation samples (green top) MUST be filled to the green line indicated on the tube.

How to request

TRAK / Request form

Availability

​Mon - Fri Routine service 09:00 - 17:00. Sat / Sun Routine service 09:00 - 13:00. Please contact the laboratory for urgent samples outside of routine hours.

Anticipated turnaround

​1 day.

What happens if the result is positive or abnormal

​The laboratory will telephone abnormal results where it appears that these are likely to be clinically significant. Please provide an appropriate telephone or bleep number.

General additional information

​The Coagulation screen comprises:

  • Prothrombin Time (PT)
  • Activated Partial Thromboplastin Time (APTT)
  • Fibrinogen (Clauss)

It is sometimes referred to as the Clotting Screen.

 

For information on the use of Monovettes, please click here - Monovette error flyer FINAL.doc

Volume - Child 1

1.4ml

Additive - Child 1

Sodium Citrate

Volume - Adult 1

3.0ml

Additive - Adult 1

Sodium Citrate

CSF Cytospin

Transport arrangements
Transport as soon as possible
Sample storage arrangements
Room Temperature
How to request
Request form
Availability
Monday - Friday: routine service 09:00 - 15:00. Saturday - Sunday: by special arrangement.
Anticipated turnaround
1 Day
What happens if the result is positive or abnormal
A new diagnosis will be telephoned to the referring consultant / registrar. Any significant change in results will be telephoned to the referring consultant / registrar. Please provide telephone/ bleep number.
General additional information
​The CSF cytospin is a screening test to detect the presence of White blood cells. If white cells are found, the Haematology registrar will be informed and determine any appropriate follow-on tests. For further information, please contact the laboratory on 0131 537 1914 if malignant cells are suspected.
Volume - Adult 1
2.0ml
Additive - Adult 1
No Additive

KIT D816V Mutation Testing

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  There is no time limit for FFPE samples.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

Requests for testing FFPE tissue should be sent to the Molecular Pathology Service at RIE with a completed HMDS test request form. 

Availability

Monday - Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days.  See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

Due to the presence of the KIT D816V mutation within mast cells, bone marrow is the preferred specimen type for this assay. While testing can be performed using peripheral blood, a false negative result cannot be excluded.

This assay may fail to detect other mutations of KIT at codon 816 (e.g. p.D816H)

The KIT p.D816V mutation is observed in approximately 90% of patients with systemic mastocytosis and arises as a result of the KIT c.2447A>T nucleotide change. Other systemic mastocytosis patients may display other mutations at D816. Since, systemic mastocytosis patients may present with eosinophilia, assessment of KIT p.D816V can also be performed in patients with eosinophilia.

Mutations within KIT, including KIT p.D816V, are also observed in patients with core finding factor leukaemia [CBFB-MYH11 / inv(16) and RUNX1-RUNX1T1 / t(8;21)]. Thus, patients who are identified as having CBFB-MYH11 and RUNX1-RUNX1T1 fusion gene are tested for the presence of a KIT D816V mutation.

For more information please see testing.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please see contact us​.

Container_Adult1
Volume - Adult 1

5ml peripheral blood, bone marrow specimen or FFPE tissue

Additive - Adult 1

EDTA

Immunoglobulin Gene Clonality

Transport arrangements

Specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  There is no time limit for FFPE samples.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

Requests for testing FFPE tissue should be sent to the Molecular Pathology Service at RIE with a completed HMDS test request form.

Availability

Monday - Friday 9am-5pm

Anticipated turnaround

Results should be expected within 10 working days.  See results.

What happens if the result is positive or abnormal

Requesting clinician will be contacted via telephone or email. Please ensure details are included on request form.

Static information/disclaimer

IG gene rearrangement studies include assessment of IGH, IGK and IGL gene loci. See testing.

IG gene rearrangement assessment is undertaken using the BIOMED‐2 designed assays, with a standard PCR protocol and primer sets designed to target the IGH, IGK and IGL loci. Clonality assessment is a useful tool to aid with the diagnosis of B cell lymphoproliferative disorders. However, the results should always be interpreted in conjunction with morphology, immunophenotyping and/or immunohistochemistry results as well as the clinical findings.

This assay is not suitable for the assessment of low level minimal residual disease in acute leukaemia or lympoproliferative neoplasms.

For details on the interpretation of results, please see Langerak et al., Leukemia 2012; 26:2159-2171

This test is accredited to ISO 15189:2012

For clinical advice on appropriate investigations and advice for the interpretation of test results, please see contact us​.

Container_Adult1
Volume - Adult 1

​5ml peripheral blood, bone marrow specimen or FFPE tissue

Additive - Adult 1

​EDTA

TCR Gene Clonality

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  There is no time limit for FFPE samples.  Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

 

 

Requests for testing FFPE tissue should be sent to the Molecular Pathology Service at RIE with a completed HMDS test request form.

Availability

Monday - Friday 9am-5pm

Anticipated turnaround

Results should be expected within 14 days. See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

TCR gene rearrangement studies include assessment of TCRB and TCRG gene loci. The TCRD gene rearrangement clonality assay is usually not performed, but is available where required (e.g. hepatosplenic T-cell lymphoma). Please see testing for more information.

TCR gene rearrangement assessment is undertaken using the BIOMED‐2 designed assays, with a standard PCR protocol and primer sets designed to target the TCRG, TCRB and TCRD loci. Clonality assessment is a useful tool to aid with the diagnosis of T cell lymphoproliferative disorders. However, the results should always be interpreted in conjunction with morphology, immunophenotyping and/or immunohistochemistry results as well as the clinical findings.

This assay is not suitable for the assessment of low level minimal residual disease in acute leukaemia or lympoproliferative neoplasms.

For details on the interpretation of results, please see Langerak et al., Leukemia 2012; 26:2159-2171

For clinical advice on appropriate investigations and advice for the interpretation of test results, please see contact us​.

Container_Adult1
Volume - Adult 1

​5ml peripheral blood, bone marrow specimen or FFPE tissue

Additive - Adult 1

​EDTA

Immunoglobulin HV Gene Sequencing

Transport arrangements

Specimens should ideally arrive within 24 hours of collection (maximum of 48 hours) and should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

 
How to request

Please refer to our detailed requestinginstructions.  The HMDS request form can be located here.​

Availability

Monday - Friday 9am-5pm

Anticipated turnaround

Results should be expected within 15 working days.  See results.​​

Static information/disclaimer

This test is accredited to ISO15189:2012.

General additional information

This assay will ascertain the mutation status of the IGHV immunoglobulin locus in patients with chronic lymphocytic leukaemia. IGHV gene mutation status is determined by the percentage homology to the germline sequence.

Homology of ≥ 98% to germline is regarded as unmutated (U-CLL), whereas a homology of < 97% is regarded as mutated (M-CLL). Homology 97-97.9% is considered borderline and therefore should be interpreted with caution.

Patients with U-CLL have a less favourable outcome compared to patients with M-CLL.

Assessment the TP53 gene by sanger sequencing can also be performed.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us​.

Container_Adult1
Volume - Adult 1

5-10 ml peripheral blood or bone marrow specimen

Additive - Adult 1

EDTA

BCR::ABL1 Tyrosine Kinase Domain Mutation Detection

Transport arrangements

Blood and bone marrow specimens should ideally arrive within 24 hours of collection (maximum of 48 hours).  Specimens should arrive no later than 3.30pm on Friday. Samples should be sent to the following address:

Western General Hospital

Haematology/Biochemistry Combined Reception

Immunophenotyping Laboratory

Crewe Road

Edinburgh

EH4 2XU​

 

See also Specimen transportation.

Sample storage arrangements

Samples should be stored at room temperature. See specimen requirements.​

How to request

Please refer to our detailed requesting ​instructions.  The HMDS request form can be located here.​

Availability

Monday - Friday 9am-5pm

Anticipated turnaround

Results should be expected within 15 working days.  See results.

Static information/disclaimer

This test is accredited to ISO 15189:2012

General additional information

Mutations in the BCR::ABL1 kinase domain cause resistance to tyrosine kinase inhibitors (TKIs) in patients diagnosed with Chronic Myeloid Leukaemia (CML). This assay is designed to identify mutations within the BCR::ABL1 Kinase domain (including T315I).  

The identification of mutations that confer resistance to TKIs may lead to a change in therapy for the patient.

For clinical advice on appropriate investigations and advice for the interpretation of test results, please contact us​.

Container_Adult1
Volume - Adult 1

5-10ml Peripheral blood or bone marrow specimen

Additive - Adult 1

EDTA

Glasgow Neuroimmunology Laboratory

Address
Level 1B
Laboratory Medicine & Facilities Building
Queen Elizabeth University Hospital
1345 Govan Road
Glasgow
G51 4TF
Phone number
0141 354 9010/9023

Huddersfield Royal Infirmary

Address
Dept Blood Science
Huddersfield Royal Infirmary
Acre Street
Lindley
Huddersfield
HD3 3EA
Phone number
01484 356884

Charing Cross Hospital, London

Address
The SAS Laboratories
Clinical Biochemistry & Medical Oncology
Charing Cross Hospital
London
W6 8RF
Phone number
020 3313 5921/0348

Freeman Hospital

Address
Clinical Biochemistry Department
Freeman Hospital
Freeman Road
Newcastle-upon-Tyne
NE7 7DN
Phone number
0191 223 1017

SHLMPRL

Address
Level 5, New Lister Building
10-16 Alexandra Parade
Glasgow Royal Infirmary
GLASGOW
G4 0SF
Phone number
0141 201 8659

St George's hospital

Address
Analytical Services International Ltd,Jenner Wing
St. George's, University of London
Cranmer Terrace
London
SW17 0RE
Phone number
020 8725 5345/5881

Chalfont Centre for Epilepsy

Address
Therapeutic Drug Monitoring Unit
Chalfont Centre for Epilepsy
Chalfont St Peter
Buckinghamshire
SL9 0RJ
Phone number
01494 601423

Crosshouse

Address
Biochemistry Dept
Crosshouse Hospital
Kilmarnock
KA2 0BE
Phone number
01563 827 477

PHE South West, Bristol

Address
PHE South West laboratory Infection Sciences Pathology Sciences Building
Southmead Hospital
Bristol
BS10 5NB
Phone number
Tel: 0117 414 6222

Scottish Mycobacteria Reference Lab

Address
Microbiology Department
Royal Infirmary of Edinburgh
Little France Crescent
Edinburgh EH16 4SA
Phone number
0131 242 6022/3 (Lab) 0131 242 6016 (Office)

WGH Cyto

Address
Western General Hospital
Crewe Road
EDINBURGH EH4 2XU
Phone number
0131 537 1940

North Bristol NHS Trust

Address
Southmead Hospital
Southmead Road
Westbury-on-Trym
Bristol
BS10 5NB
Phone number
0117 970 1212

SAS Centre, Leeds

Address
Department of Clinical Biochemistry & Immunology
Leeds General Infirmary
LEEDS
LS1 3EX
Phone number
0113 392 3517

Llandough Hospital

Address
Toxicology Lab
The Academic Centre
Llandough Hospital
Penarth
CF64 2XX
Phone number
02920 716894

SJH

Address
Howden Road West
Howden
Livingston
West Lothian
EH54 6PP
Phone number
01506 523000

WGH

Address
Crewe Road South
Edinburgh
EH4 2XU
Phone number
0131 537 1000

RIE

Address
51 Little France Crescent
Old Dalkeith Road
Edinburgh
EH16 4SA
Phone number
0131 536 1000

Cytology

Description

​[Description: Cytology]

Pathology

Description

​[Description: Pathology]

Virology

Description

​[Description: Virology]

Mycology

Description

​[Description: Mycology]

NHS Lothian Laboratory Medicine

NHS Lothian Laboratories COVID-19 Update

​CURRENT LAB MEDICINE TESTING POSITION

 

Last updated: 23/04/2020

 RHSC- small combined Biochemistry and Haema​tology Lab shut down from 27/02/2020 - transferred work to RIE

Biochemistry
 Service continue as normal 
With the exception of:-
  • Faecal calprotectin -routine requests discontinued for safety and operational reasons. Urgent requests made by gastroenterology will be processed for patients that are not suspected or confirmed to have covid19
  • Oral fluid drugs of abuse screening (DOA) - discontinued for safety reasons. If a DOA screen is absolutely necessary a urine DOA screen should be sent.
  • Pleural fluid biochemistry analysis (including pleural fluid pH, LDH, glucose and protein) is no longer being provided in the laboratory for covid19 positive patients due to a possible infection risk to lab staff.  Pleural fluid pH and glucose measurements for covid19 positive patients should be carried out on a gas analyser within a covid19 area in the main hospital.    For covid19 negative patients pleural fluid samples will continue to be processed in the main laboratory.  For any patients with suspected covid19 pleural fluid samples will be stored by the lab and only processed if the Covid19 PCR results are negative.
Haematology
Service continue as normal
Immunology

Service continue as normal
Blood Transfusion

Service continue as normal
Histopathology Services

Service continue as normal
Microbiology (Bacteriology)
Services continue as normal
With exception of Gastric Biopsies for Helicobacter analysis - Public Health England, where these are referred to, have indicated they will temporarily stop this service as a result of the Covid19 situation.
Molecular Pathology/HMDS
Service continue as normal
Haemophilia Genetics
Service continue as normal
Cytogenetics and Molecular Genetics, WGH
Service continue as normal
Virology Serology
Service continue as normal
Virology Molecular Diagnostics

Services are constrained but at manageable levels

SARS CoV-2 tests are the laboratory main priority and we are currently processing 200 requests a day and potentially this will be 500 per day.

The following routine tests are reduced or stopped

 

  • Full respiratory viral PCR testing is suspended but is available for few key areas, ICU, Transplant and haematology.
  • HIV/HCV Viral Load:  is only being done once a week as opposed to twice. 
  •  HBV assay:   assay is only being done once every 2 weeks as opposed to every week.
  •  Quantitative CMV, BKV EBV is being done twice per week as opposed to 4 times a week. 
  •  Syphilis IgM and TPPA assays are suspended for now. RPR will be only additional test.
  •  No Mumps PCR testing (Store)
  •  CSF testing is unaffected

 

Genital and Skin swabs are not being tested for HSV and VZV by PCR.

 
This page will be updated as and when the service changes.